Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,572,358 – 14,572,454 |
Length | 96 |
Max. P | 0.536012 |
Location | 14,572,358 – 14,572,454 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 87.33 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -21.23 |
Energy contribution | -21.87 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.22 |
Mean z-score | -1.97 |
Structure conservation index | 0.79 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.536012 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14572358 96 - 22407834 GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUUAUGUCGCUGCCAAGACAUGAAGUGGUGCGAGAUAUGCAAGCCGCUCGCACCAAAU------AUGG .........(((.(((((((...))))))).))).(((((((........)))))))..(((((((((....(....)..)))))))))...------.... ( -27.40) >DroSec_CAF1 103968 96 - 1 GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUUGUGUCGCUGCCAAGACAUGAAGUGGUGCGAGAAAUGCAAGCCCCUCGCACCAAAU------AAGG .........(((.(((((((...))))))).))).(..((((........))))..)..(((((((((............)))))))))...------.... ( -26.40) >DroSim_CAF1 91429 96 - 1 GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUUGUGUCGCUGCCAAGACAUGAAGUGGUGCGAGAAAUGCAAGCCCCUCGCACCAAAU------AGGG .........(((.(((((((...))))))).))).(..((((........))))..)..(((((((((............)))))))))...------.... ( -26.40) >DroEre_CAF1 98411 94 - 1 GAAAAUGCGAAUAUAAUUGCAGUGCAGUUAAUUUAUC--GUCGCUGCCAACACAUGAAGUGGUGCGAGAAGUGCAAGCCGCUUGCUGCAA------GGAAUC ................((((((((((((.........--...))))).........((((((((((.....)))..))))))))))))))------...... ( -23.30) >DroYak_CAF1 95985 100 - 1 GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUU--GUCGCUGCCAACACAUGAAGUGGUGCGAGAAGUGCAAGCCCCUUGCACCAAAUAAGUGGAAGU .....(((....)))...((((((((((......)))--).))))))...(((.((...(((((((((..((....))..)))))))))..)).)))..... ( -29.70) >DroAna_CAF1 41652 95 - 1 GAAAAUGCGAAAAUAAUUGCAGUGCAGUUAAUUUAUUAUGUCGCUGCCAAGACGUAAAGUGGUGCGAGAUGUGCAGGCC-CUCGCACCAAAC------CAGU .........(((.(((((((...))))))).))).(((((((........)))))))..(((((((((..((....)).-)))))))))...------.... ( -27.00) >consensus GAAAAUGUGAAAAUAAUUGCAGUGCAGUUAAUUUAUU_UGUCGCUGCCAAGACAUGAAGUGGUGCGAGAAAUGCAAGCCCCUCGCACCAAAU______AAGG .............(((((((...))))))).....(((((((........)))))))..(((((((((............)))))))))............. (-21.23 = -21.87 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:50 2006