Locus 5131

Sequence ID 2L_DroMel_CAF1
Location 14,571,157 – 14,571,251
Length 94
Max. P 0.796812
window8173

overview

Window 3

Location 14,571,157 – 14,571,251
Length 94
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.83
Mean single sequence MFE -27.89
Consensus MFE -18.21
Energy contribution -18.54
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.29
Structure conservation index 0.65
SVM decision value 0.60
SVM RNA-class probability 0.796812
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14571157 94 - 22407834
UGGUCAUGCAUGGCAUUCAAAGGUUAAUUGGCAUUUUCGGUGUAUUAUUUUAUUUCGGCCUUAAUUGCC-AGUGAGUGGCACAUGCA-CAUG------------------------CACC
.((((((((((((((((((..(((.....(((.....(((.(((......))).))))))......)))-..))))).)).))))))-..))------------------------.))) ( -26.80)
>DroVir_CAF1 44724 77 - 1
UGGCCAUGCAUGGCAUUCAAAGGUUAAUUGGCAUUUUC------------------GGGCUUAAUUGCCUAGCGAGUGACACAUGCA-CAUG------------------------CACC
..((..((((((.(((((..((((.....(((......------------------..))).....))))...)))))...))))))-...)------------------------)... ( -22.60)
>DroPse_CAF1 116562 94 - 1
UGGUCAUGCAUGGCAUUCAAAGGUUAAUUGGCAUUUUU-GUGUAUUAUUUUAUUUCGGCCUUAAUUGCC-AUUGAGUGGCACAUGCAUCAUG------------------------CACC
.(((((((((((((((((((.(((.....(((......-(((........)))....)))......)))-.)))))).)).))))))...))------------------------.))) ( -25.90)
>DroYak_CAF1 94789 118 - 1
UGGUCAUGCAUGGCAUUCAAAGGUUAAUUGGCAUUUUCGGUGUAUUAUUUUAUUUCGGCCUUAAUUGCC-AGUGAGUGGCACAUGCA-CAUGCACAUGCACAUUCACAUUCACAUGCACC
.(((((((..(((((....(((((..(...((((.....))))...........)..)))))...))))-)((((((((((..(((.-...)))..))).))))))).....)))).))) ( -35.74)
>DroAna_CAF1 40424 94 - 1
UGGCCGUGCAUGGCAUUCAAAGGUUAAUUGGCAUUUUCGGUGUAUUAUUUUAUUUGGGCCUUAAUUGCC-AGUGAGUGGCACAUGCA-CAUG------------------------CACA
.....(((((((((((.....(.(((.((((((.((..(((.((..........)).)))..)).))))-))))).).....)))).-))))------------------------))). ( -30.40)
>DroPer_CAF1 120827 94 - 1
UGGUCAUGCAUGGCAUUCAAAGGUUAAUUGGCAUUUUU-GUGUAUUAUUUUAUUUCGGCCUUAAUUGCC-AUUGAGUGGCACAUGCAUCAUG------------------------CACC
.(((((((((((((((((((.(((.....(((......-(((........)))....)))......)))-.)))))).)).))))))...))------------------------.))) ( -25.90)
>consensus
UGGUCAUGCAUGGCAUUCAAAGGUUAAUUGGCAUUUUC_GUGUAUUAUUUUAUUUCGGCCUUAAUUGCC_AGUGAGUGGCACAUGCA_CAUG________________________CACC
......(((((((((((((..(((.....(((.........................)))......)))...)))))).).))))))................................. (-18.21 = -18.54 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:49 2006