Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,549,148 – 1,549,239 |
Length | 91 |
Max. P | 0.819839 |
Location | 1,549,148 – 1,549,239 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -24.05 |
Consensus MFE | -12.94 |
Energy contribution | -13.67 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.29 |
Mean z-score | -2.33 |
Structure conservation index | 0.54 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1549148 91 + 22407834 AAAUACUCGUAGAACAAUGGCAGCCACAGAAUGUUUGAUAAAUUUGGUUCCUCAUUGUUCGCCGGGAUACAAAGUGUGUGAAA-AUACAGAA .....((((..(((((((((.(((((..................))))).).))))))))..))))........(((((....-)))))... ( -23.57) >DroSec_CAF1 30861 91 + 1 AAAUACUCGUAGAACAAUGGCAGCCACAGAAUGUUUGAUAAAUUUGGUUCCUCAUUGUUCGCCGGGAUGCAAAGUGUGUGAAA-AUACAGCA .....((((..(((((((((.(((((..................))))).).))))))))..)))).(((....(((((....-)))))))) ( -24.27) >DroSim_CAF1 32877 91 + 1 AAAUACUCGUAGAACAAUGGCAGCCACAAAAUGUUUGAUAAAUUUGGUUCCUCAUUGUUCGCCGGGAUGCAAAGUGUGUGAAA-AUACAGCA .....((((..(((((((((.(((((..................))))).).))))))))..)))).(((....(((((....-)))))))) ( -24.27) >DroEre_CAF1 31191 91 + 1 AAAUGCUCGUGGAACAAUGGCGACCACAGAAUGUUUGAUAAAUUUGGCUGCUCAUUGUUCGCCGGGAUGCAAAGUGUUAGAAA-AUACAGCA .....((((..(((((((((((.(((..................))).))).))))))))..)))).(((...(((((....)-)))).))) ( -23.17) >DroYak_CAF1 30335 91 + 1 AAAUACUCGCAGAACAAUGGCAGCCACAAAACGUUUGAUAAAUUCGGUUGCUCAUUGUUCGCCGAGAUACAAUGUGUUAGAAA-AUACAGCA .....((((..((((((((((((((((.....))..((.....)))))))).))))))))..))))......((((((....)-)))))... ( -28.60) >DroPer_CAF1 63968 82 + 1 CUGUACUCGUAGAAUAACGACACAGCCAGUAUGUUUG----------UCUUUCAUUGUUCUCUCCAGUCGAAAGAGUGUCAAAUGUACAGUG ((((((..((......))(((((...(((.....)))----------((((((((((.......)))).)))))))))))....)))))).. ( -20.40) >consensus AAAUACUCGUAGAACAAUGGCAGCCACAGAAUGUUUGAUAAAUUUGGUUCCUCAUUGUUCGCCGGGAUGCAAAGUGUGUGAAA_AUACAGCA .....((((..(((((((((.((((....................)))).).))))))))..)))).......................... (-12.94 = -13.67 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:56 2006