Locus 5123

Sequence ID 2L_DroMel_CAF1
Location 14,554,446 – 14,554,539
Length 93
Max. P 0.875126
window8157

overview

Window 7

Location 14,554,446 – 14,554,539
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 85.70
Mean single sequence MFE -14.38
Consensus MFE -14.52
Energy contribution -14.38
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -1.31
Structure conservation index 1.01
SVM decision value 0.89
SVM RNA-class probability 0.875126
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14554446 93 - 22407834
CUCACUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACUCUCUAAUUUUUUUCC---UUCGUUUUGUUU
.....(((.(((..(((((((........)))))))..))).)))((((....))))........................---............ ( -14.50)
>DroPse_CAF1 96790 78 - 1
CUCGCUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUAUUUUCUAAUUUUUU------------------
.....(((.(((..(((((((........)))))))..))).)))((((....)))).....................------------------ ( -14.50)
>DroSim_CAF1 73685 93 - 1
CUCACUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACUCUCUAAUUUUUUUCC---CUCGUUUUGUUU
.....(((.(((..(((((((........)))))))..))).)))((((....))))........................---............ ( -14.50)
>DroEre_CAF1 80639 81 - 1
CUCACUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACCCUCUAAUUUUUC---------------UUU
.....(((.(((..(((((((........)))))))..))).)))((((....)))).....................---------------... ( -14.50)
>DroYak_CAF1 77508 96 - 1
CUCACUCGUUCGUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACUCUCUAAUUUUUUUCCCCCCUCGCCGCGUUU
.....(((.(((..(((((((........)))))))..))).)))((((....))))....................................... ( -13.80)
>DroPer_CAF1 101090 78 - 1
CUCGCUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUAUUUUCUAAUUUUUU------------------
.....(((.(((..(((((((........)))))))..))).)))((((....)))).....................------------------ ( -14.50)
>consensus
CUCACUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACUCUCUAAUUUUUU_______________UUU
.....(((.(((..(((((((........)))))))..))).)))((((....))))....................................... (-14.52 = -14.38 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:34 2006