| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,550,776 – 14,550,871 |
| Length | 95 |
| Max. P | 0.833811 |
| Location | 14,550,776 – 14,550,871 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.30 |
| Mean single sequence MFE | -28.28 |
| Consensus MFE | -16.08 |
| Energy contribution | -17.05 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.833811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14550776 95 - 22407834 AUGAUGGGGGCACGCCCACAUUCGGCAGCCCCAAACAUCGAGCACAUUUUGCCGGUGCCCCA---------------------ACAUCGAACG-UCGUGCUCCCUGCACAGCUGCAA .((((((((((..(((.......))).)))))...(((((.(((.....)))))))).....---------------------.)))))...(-(.((((.....)))).))..... ( -34.20) >DroPse_CAF1 92610 86 - 1 AUGAUGAUGGCACGCCCACAUUCAGCAUUC---AGCAUUCAGCA---UUCGGC----AUUCA---------------------ACAUUCAACAUUCGUGCUCUCUGCACAGCUGCAA .(((((.(((.....))))).))).....(---(((.....((.---....))----.....---------------------.............((((.....)))).))))... ( -16.00) >DroSec_CAF1 82612 95 - 1 AUGAUGGGGGCACGCCCACAUUCGGCAGCCCCAAACAUCGAGCACAUUUUGCCGGUGCCCCA---------------------ACGUCGAACG-UCGUGCUCCCUGCACAGCUGCAA .....(((((((((...((.((((((.........(((((.(((.....)))))))).....---------------------..)))))).)-))))))))))((((....)))). ( -34.19) >DroSim_CAF1 70098 91 - 1 AUGAUGGGGGCACGCCCACAUUCGGCAGCC-CAAACAUCGAGCACAUUUUGUC-GUGCCCCA---------------------ACAUCGAACG-UCGUGCUC-CUGCACAGCUGCC- .(((((((((((((((.......))).((.-(.......).))..........-))))))).---------------------.)))))...(-(.((((..-..)))).))....- ( -31.10) >DroYak_CAF1 73595 116 - 1 AUGAUGGGGGCACGCCCACAUUCGGCAGCCCCAAACACUGAGCACAUUUUGCCAGAGCCCCAACAUCGAACAUCGAAUGUCGAACGUCGAACG-UCGUGCUCCCUGCACAGCUGCAA ..(((((((((..(((.......)))...........(((.(((.....)))))).)))))....((((...(((.....)))...)))).))-))((((.....))))........ ( -38.40) >DroPer_CAF1 96888 79 - 1 AUGAUGAUGGCACGCCCACAUUCAGCAU----------UCAGCA---UUCGGC----AUUCA---------------------ACAUUCAACAUUCGUGCUCUCUGCACAGCUGCAA ..((((.(((.....)))))))((((..----------...((.---....))----.....---------------------.............((((.....)))).))))... ( -15.80) >consensus AUGAUGGGGGCACGCCCACAUUCGGCAGCC_CAAACAUCGAGCACAUUUUGCC_GUGCCCCA_____________________ACAUCGAACG_UCGUGCUCCCUGCACAGCUGCAA ..((((.(((....))).))))..(((((............((.......))............................................((((.....)))).))))).. (-16.08 = -17.05 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:33 2006