Locus 5121

Sequence ID 2L_DroMel_CAF1
Location 14,550,650 – 14,550,746
Length 96
Max. P 0.731115
window8155

overview

Window 5

Location 14,550,650 – 14,550,746
Length 96
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 85.93
Mean single sequence MFE -29.08
Consensus MFE -22.06
Energy contribution -22.78
Covariance contribution 0.73
Combinations/Pair 1.16
Mean z-score -2.73
Structure conservation index 0.76
SVM decision value 0.42
SVM RNA-class probability 0.731115
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14550650 96 - 22407834
--GGGAAACAAAUUUGAAUUCAAUGAAAGAUGAAAUCAUUAAGUUUUCAGGCAAUUGAAGGCGGCUGCAA------AUGCGGUUGGCUUUAAUCGUGCUG-------GAGU
--.((((((.....(((.((((.(....).)))).)))....)))))).(((((((((((.(((((((..------..))))))).)))))))..)))).-------.... ( -30.50)
>DroPse_CAF1 92474 96 - 1
AGGGGAAACAAAUUUGAAUUCAAUGAAAGAUGAAAUCAUUAAGUUUUCAGGCAAUUGAAGGCGGCUGCGA------AUGC--CUACCUUUAAUCGUGUCC-------AAGC
.((((((((.....(((.((((.(....).)))).)))....))))))..((.((((((((.(((.....------..))--)..)))))))).))..))-------.... ( -24.20)
>DroEre_CAF1 76930 96 - 1
--GGGAAACAAAUUUGAAUUCAAUGAAAGAUGAAAUCAUUAAGUUUGCCGGCAAUUGAAGGCGGCUGCGA------AUGCGGUUGGCUUUAAUCGCGCUG-------GAGU
--((.((((.....(((.((((.(....).)))).)))....)))).)).((.(((((((.(((((((..------..))))))).))))))).))....-------.... ( -31.00)
>DroYak_CAF1 73463 102 - 1
--GGGAAACAAAUUUGAAUUCAAUGAAAGAUGAAAUCAUUAAGUUUGCAGGCAAUUGGAGGCGGCUGCGAAUGCGAAUGCGGUUGGCUUUAAUCGCGCCG-------GAGU
--.(.((((.....(((.((((.(....).)))).)))....)))).).(((.(((((((.((((((((........)))))))).)))))))...))).-------.... ( -28.60)
>DroAna_CAF1 21248 103 - 1
--GGGAAACAAAUUUGAAUUCAAUGAAAGAUGAAAUCAUUAGGUUUGGAGGCAAUUGAAGGCGGCUGCGA------AUGCGGUUGGCUUUAAUCGUGCCCGGGACCCGGGU
--.(....).....(((.((((.(....).)))).)))(..(((((.(.(((((((((((.(((((((..------..))))))).)))))))..))))).)))))..).. ( -36.00)
>DroPer_CAF1 96752 96 - 1
AGGGGAUACAAAUUUGAAUUCAAUGAAAGAUGAAAUCAUUAAGUUUUCAGGCAAUUGAAGGCGGCUGCGA------AUGC--CUACCUUUAAUCGUGUCC-------AAGC
...((((((.....(((.((((.(....).)))).)))...............((((((((.(((.....------..))--)..)))))))).))))))-------.... ( -24.20)
>consensus
__GGGAAACAAAUUUGAAUUCAAUGAAAGAUGAAAUCAUUAAGUUUGCAGGCAAUUGAAGGCGGCUGCGA______AUGCGGUUGGCUUUAAUCGUGCCC_______GAGU
...(.((((.....(((.((((.(....).)))).)))....)))).).(((((((((((.((((((((........)))))))).)))))))..))))............ (-22.06 = -22.78 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:32 2006