Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,543,147 – 1,543,259 |
Length | 112 |
Max. P | 0.581544 |
Location | 1,543,147 – 1,543,259 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 91.07 |
Mean single sequence MFE | -38.33 |
Consensus MFE | -31.50 |
Energy contribution | -32.62 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.49 |
Structure conservation index | 0.82 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1543147 112 - 22407834 GGGCACUUGAAUUCCCUUUUUGGGUGCUCGUUGUCUUACUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUUGGCUCCAGUUGCCAUCUGCUCCACGAUGGAGUGUAC (((((((..((.......))..)))))))(((((((.((((((((.......))))..)))).))))))).....((((.......))))...(((((.....))))).... ( -42.70) >DroSec_CAF1 24887 112 - 1 GGGCACUUGAAUUCCCUUUUUGGGAGCUCGUUGCCUGUCUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUUGGCUCCAGUUGCCAUCUGCUCCACGAUGGAGUGUAC (((((..(((.(((((.....))))).))).)))))..(((((((.......)))(.(((((..((((((((.........))))))))....)).))))...))))..... ( -41.10) >DroEre_CAF1 23421 112 - 1 GGGCACUUGAAUUCCCUUUUUGGUAGCUCGUUGUCUUCCUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUCGACUCCAGCGGCCAUCUGCUGCACGAUGAAGCCUAC (((((((.(((......))).)))...(((((((.......((((.......)))).((((((((((....).)))))).)))(((((.....)))))))))))).)))).. ( -33.70) >DroYak_CAF1 24305 112 - 1 GAGCACUUGAAUUCCCUUUUUGGCAGCUCGUUGUCUUCCUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUCGACUUCAGUUGCCAUCUGCUCAACGAUGAUGCCUAC (((((........(((...((((.((....((((((......))))))..)).)))).)))...(((((((((.......)))))))))...)))))............... ( -35.80) >consensus GGGCACUUGAAUUCCCUUUUUGGGAGCUCGUUGUCUUCCUCCGGACAAAUCUUCCGAUGGGUUGGGCAGCUGACUCGACUCCAGUUGCCAUCUGCUCCACGAUGAAGCCUAC (((((........(((...(((((((....((((((......))))))..))))))).)))...((((((((.........))))))))...)))))............... (-31.50 = -32.62 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:55 2006