| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,542,060 – 14,542,161 |
| Length | 101 |
| Max. P | 0.638026 |
| Location | 14,542,060 – 14,542,161 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.57 |
| Mean single sequence MFE | -27.78 |
| Consensus MFE | -6.90 |
| Energy contribution | -6.23 |
| Covariance contribution | -0.67 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638026 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14542060 101 + 22407834 CGAGAGCCC--GGCACAAAUGUCACAUCAAUCUUGUGUCCAGCGUUGCGUAAGAAGUAAAGAA-AAUAUUCAUUUUGUUUUUUUU------GCGC---CAUGUC--CC--GC-UUCUU-- .((((....--(((((((.((......))...))))))).((((..((((.....((((((((-((((.......))))))))))------))..---.)))).--.)--))-)))))-- ( -25.10) >DroVir_CAF1 17803 84 + 1 CGAGAGCC---AACACAAAUGUCACAUCAAUCUUGUGACCAGUGUUGCGUAAGAAGUAAAGAA-AAUAUUCAUUUUGCUU--UGG------CCCCC------------------------ .....(((---(((((....((((((.......))))))..)))))......(((((((((((-....)))..)))))))--)))------)....------------------------ ( -20.70) >DroPse_CAF1 81350 92 + 1 CGAGGGCCCCAAACACAAAUGUCACAUCAAUCUUGUGUCCAGCGUUGCGUAAGAAGCAACGAA-AAUAUUCAUUUC-------UU------CCCC---C----C--CC--CC-CCCCA-- ...(((......((((((.((......))...))))))....((((((.......))))))..-............-------..------....---.----.--..--..-.))).-- ( -16.70) >DroEre_CAF1 69009 101 + 1 CGAGAGCCC--GGCACAAAUGUCACAUCAAUCUUGUGUCCAGCGUUGCGUAAGAAGUAAGGAA-AAUAUUCAUUUUGCUU--UUG------GCGC---AAGUUG--CC--GC-UUCUUUU .((((((..--(((((((.((......))...)))))))((((.((((((.((((((((.(((-....)))...))))))--)).------))))---))))))--..--))-.)))).. ( -29.20) >DroMoj_CAF1 21760 102 + 1 CGAGAGCC---AACACAAAUGUCACAUCAAUCUUGUGACCAGUGUUGCGUAAGCAGCAAGGAA-AAUAUUCAUUUUGUUU--UGG------CUGUCGCCCCUCC--CU--GCCCUCUC-- (((.((((---((.(((((.((((((.......))))))(..((((((....))))))..)..-.........))))).)--)))------)).))).......--..--........-- ( -35.40) >DroAna_CAF1 12339 110 + 1 CGAGGGCCC--AGCACAAAUGUCACAUCAAUCUUGUGUCCAGCGUUGCGUAAGAAGUAAAGAAAAAUAUUCAUUUUGUUU--CUUCCAGGGGCAC---GAGGGGGCCCUCGC-CCCAC-- (((((((((--.(((....)))........((((((((((.(((...)))..((((.(((.((((.......)))).)))--))))...))))))---))))))))))))).-.....-- ( -39.60) >consensus CGAGAGCCC__AACACAAAUGUCACAUCAAUCUUGUGUCCAGCGUUGCGUAAGAAGUAAAGAA_AAUAUUCAUUUUGUUU__UUG______CCGC___CA___C__CC__GC_CUCUC__ (((((((.....((.(((.((.((((.......))))..))...))).)).....))...(((.....))).)))))........................................... ( -6.90 = -6.23 + -0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:24 2006