Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,540,817 – 14,540,909 |
Length | 92 |
Max. P | 0.516421 |
Location | 14,540,817 – 14,540,909 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 83.42 |
Mean single sequence MFE | -25.78 |
Consensus MFE | -19.61 |
Energy contribution | -20.70 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.17 |
Mean z-score | -1.47 |
Structure conservation index | 0.76 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516421 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14540817 92 + 22407834 -----CUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUUCCAGU -----.((((((((((((...(.((.((((((.....))(((....)))..............)))).)))...).))))))))))).......... ( -27.60) >DroVir_CAF1 11759 81 + 1 GACGU----------CGCUUUGAUUAAUGAGCCUGGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAACAACGC------ ..(((----------.((((........))))..((.(((((....))).))..(((((((((((...)))))))))))))......))).------ ( -19.00) >DroSec_CAF1 72735 92 + 1 -----CUGUUGUGGUCACUUUGAUCGAUGGGACCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUUCCAGU -----.((((((((((.......(((........)))(((((....))).))....((((((((....).))))))))))))))))).......... ( -26.40) >DroEre_CAF1 67814 92 + 1 -----CUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCGGCAAUUAAUAAAGCCAUGGACUUUGUUGGCCGCAACAAUAUUCCAGU -----.((((((((((((...(.((.((((((.....))(((....)))..............)))).)))...).))))))))))).......... ( -27.00) >DroAna_CAF1 11200 92 + 1 -----CUGUUGUGGUCAUUUUGAUGGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAACAAUAUUCCAGU -----.((((((((((.......(((.......))).(((((....))).))....(((((((((...))))))))))))))))))).......... ( -28.00) >DroPer_CAF1 84491 86 + 1 -----CUGUUGCGGUCAGUUUGAUUGAUGAGCCCAGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAUCGAGAU------ -----.((.(((((((((.(((((((....((.....))(((....)))..)))))))(((((((...)))))))))))))))).))....------ ( -26.70) >consensus _____CUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUUCCAGU ......((((((((((.....................(((((....))).))....((((((((....).))))))))))))))))).......... (-19.61 = -20.70 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:22 2006