Locus 5113

Sequence ID	2L_DroMel_CAF1
Location	14,539,567 – 14,539,659
Length	92
Max. P	0.535104

overview

Window 3

Location	14,539,567 – 14,539,659
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	92.80
Mean single sequence MFE	-22.38
Consensus MFE	-17.08
Energy contribution	-18.24
Covariance contribution	1.16
Combinations/Pair	1.05
Mean z-score	-1.61
Structure conservation index	0.76
SVM decision value	0.00
SVM RNA-class probability	0.535104
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14539567 92 - 22407834
GCCAUGAGGCGUCUCUAAUUAACCGCACAAAUAUGUGGAACAUUGCCUCAGCAGUGUCCCCCAACCAGGAAAGCCCAUCACGCCACAACUAG
....((.(((((..........(((((......))))).(((((((....)))))))..........((.....))...))))).))..... ( -22.30)
>DroSec_CAF1 71464 92 - 1
GCCACGAGGCGUCUCUAAUUAACCGCACAAAUAUGUGGAACAUUGCCUCAGCAGUGUCCCCCAACCAGGAAAGCCCAUCACGCCACAACUAG
.......(((((..........(((((......))))).(((((((....)))))))..........((.....))...)))))........ ( -21.90)
>DroSim_CAF1 57279 92 - 1
GCCAUGAGGCGUCUCUAAUUAACCGCACAAAUAUGUGGAACAUUGCCUCAGCAGUGUCCCCCAACCAGGAAAGCCCAUCACGCCACAACUAG
....((.(((((..........(((((......))))).(((((((....)))))))..........((.....))...))))).))..... ( -22.30)
>DroEre_CAF1 66677 88 - 1
GCCAUGAGGCGUCUCUAAUUAACCGCACAAAUAUGUGAAACACUGCCUCG---GUGUCCCCCAC-CGGGAAGGCCCAUUACGCCACAACUAA
....((.(((((.............((((....)))).....((..((((---(((.....)))-)))).)).......))))).))..... ( -22.70)
>DroYak_CAF1 62245 89 - 1
GCCACGAGGCGUCUCUAAUUAACCGCACAAAUAUGUGGAACACUGCCUCG---GUGUCCCCCACCCAGGAAAGCCCAUCACGCCACAACUAG
.......(((((..........(((((......))))).......(((.(---(((.....)))).)))..........)))))........ ( -22.70)
>consensus
GCCAUGAGGCGUCUCUAAUUAACCGCACAAAUAUGUGGAACAUUGCCUCAGCAGUGUCCCCCAACCAGGAAAGCCCAUCACGCCACAACUAG
.......(((((..........(((((......))))).(((((((....)))))))..........((.....))...)))))........ (-17.08 = -18.24 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:21 2006