| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,538,903 – 14,539,010 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 14,538,903 – 14,539,010 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 87.14 |
| Mean single sequence MFE | -23.86 |
| Consensus MFE | -15.06 |
| Energy contribution | -14.98 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14538903 107 - 22407834 UGAAGGAAAUUUUACUGCUCAAACAGAGCAU-UUUCAAUAUGAAAUUAAUGGUUAAGGUUGUAAGCCACAUAAACCAUUGCUGUGUGAACCGAAACCAUUUC-CCAUCU ....(((((......(((((.....))))).-((((.....))))....(((((..((((......((((((.........))))))))))..)))))))))-)..... ( -23.00) >DroSec_CAF1 70834 107 - 1 UGAAGCAACCUUUACUGCUCAAACAGAGUUU-UCUCAAUAUGAAAUUAAUGGUUAAGGUUGUAAGCCACAUAAACCACUGCUAUGUGAACCAAAACCAUUUC-CCAUCU ....((((((((.(((((((.....))))((-((.......)))).....))).))))))))....((((((.........))))))...............-...... ( -20.40) >DroSim_CAF1 56638 107 - 1 UGAAGCAACCUUUACUGCUCAAACAGAGCAU-UUUCAAUAUGAAAUUAAUGGUUAAGGUUGUAAGCCACAUAAACCACUGCUAUGUGAACCAAAACCAUUUC-CCAUCU ....((((((((.(((((((.....))))..-((((.....)))).....))).))))))))....((((((.........))))))...............-...... ( -23.30) >DroEre_CAF1 65983 108 - 1 CGAAGGAACUUUAAGUGCUCAAACAUGGCCUGUUCCAAUAUGAAAGUAAUGGUUUAGGUUGUAAGCCACAUUAACCACUGCUGUGUGGACCGAAACCAUUUC-CCAUCU ....((((......(((((.....(..(((((..(((.(((....))).)))..)))))..).)).))).....((((......))))...........)))-)..... ( -26.50) >DroYak_CAF1 61513 106 - 1 UUA---AACUUUUAAUGCUGAAACAGACCAUUUUUCAAUACGAAAUUAAUGGUUAAGGUUGCAGGCCACAUAAACCACUGCUGUGUGAGCCGAAACCAUUUCCCCAUCU ...---........(((..((((..(((((((((((.....))))..)))))))..((((...(((((((((.........)))))).)))..)))).))))..))).. ( -26.10) >consensus UGAAGCAACUUUUACUGCUCAAACAGAGCAU_UUUCAAUAUGAAAUUAAUGGUUAAGGUUGUAAGCCACAUAAACCACUGCUGUGUGAACCGAAACCAUUUC_CCAUCU ................((((.....))))..................(((((((..((((......((((((.........))))))))))..)))))))......... (-15.06 = -14.98 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:20 2006