Locus 5111

Sequence ID 2L_DroMel_CAF1
Location 14,538,086 – 14,538,176
Length 90
Max. P 0.944196
window8141

overview

Window 1

Location 14,538,086 – 14,538,176
Length 90
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 77.77
Mean single sequence MFE -21.44
Consensus MFE -13.57
Energy contribution -14.50
Covariance contribution 0.93
Combinations/Pair 1.15
Mean z-score -2.11
Structure conservation index 0.63
SVM decision value 1.34
SVM RNA-class probability 0.944196
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14538086 90 - 22407834
--AGAAAUUGCUACCCCAAA-AAACACUCUCCAAUUCGACAUGGGCCCCUCUUUGUGGGGGCGCAGACAUAUUUUGUGCCGCCCAUUAACAUA
--..................-...................(((((((((.......)))((((((((.....))))))))))))))....... ( -24.80)
>DroSec_CAF1 70015 92 - 1
AUAGAAAUUGCUACCCCAAA-AAACACUCUCCAAUUCGACAUGGACCCCUCUUUGUGGGGGCGCAGACAUAUUUUGUGCCGCCCAUUAACAUA
.........((...((((..-........((((........))))..........))))((((((((.....))))))))))........... ( -21.25)
>DroSim_CAF1 55816 92 - 1
AUAGAAAUUGCUACCCCAAA-AAACACUCUCCAAUUCGACAUGGACCCCUCUUUGUGGGGGCGCAGACAUAUUUUGUGCCGCCCAUUAACAUA
.........((...((((..-........((((........))))..........))))((((((((.....))))))))))........... ( -21.25)
>DroEre_CAF1 65207 83 - 1
--------UGCUACCCCAAA--AACACUCUGCGAUUCGACGUGGCCCCCUCUUUGUGGGGGCGCAGACAUAUUUUCUGCCGCCCAUUAACAUA
--------............--........(((..........((((((.......))))))(((((.......))))))))........... ( -23.20)
>DroYak_CAF1 60712 84 - 1
--------UGCUACCUCAAAAAAACACUCUCCAAUUCGAUAUGGCCCCC-CUUUGUGGGGGCGCAGACAUAUUUUGCGCCGCCCAUUAACAUA
--------.((((..((....................))..))))....-....(((((((((((((.....)))))))).)))))....... ( -22.25)
>DroMoj_CAF1 11168 69 - 1
----AAAGCGCCACACAUAA-A-------UGCAUAACGACAUCGGUGGCACUUUGUG--GACGCAGACA------GUG----CUAUUAACAUA
----...((((((((...((-.-------(((....((....))...))).))))))--).))).....------...----........... ( -15.90)
>consensus
____AAAUUGCUACCCCAAA_AAACACUCUCCAAUUCGACAUGGACCCCUCUUUGUGGGGGCGCAGACAUAUUUUGUGCCGCCCAUUAACAUA
......................................................(((((((((((((.....)))))))).)))))....... (-13.57 = -14.50 +   0.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:19 2006