Locus 5109

Sequence ID 2L_DroMel_CAF1
Location 14,535,345 – 14,535,436
Length 91
Max. P 0.770702
window8138

overview

Window 8

Location 14,535,345 – 14,535,436
Length 91
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 80.24
Mean single sequence MFE -24.10
Consensus MFE -14.23
Energy contribution -17.35
Covariance contribution 3.12
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.59
SVM decision value 0.53
SVM RNA-class probability 0.770702
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14535345 91 - 22407834
UUUUCCCCAACCAUUUUGGU-UGGUUUAACCAACCGAAUG----AACUGCUGU--------CGGGCUUACCCAGCUGUCAUUCUUAGACAGUUUGCAGAUGCAC
...........(((((.(((-(((.....)))))))))))----..((((...--------.(((....)))(((((((.......))))))).))))...... ( -29.80)
>DroSec_CAF1 67373 92 - 1
UUUUCCCCAGCCAUUUUGGUCUGGUUUAACCAACCGAAUG----AACUGCUAU--------CGGGCUUACCCAGCUGUCAUUCUUGGACAGUUUGCAGAUGCAC
.........(((((((.(((.(((.....)))))))))))----..((((...--------.(((....)))(((((((.......))))))).))))..)).. ( -27.40)
>DroSim_CAF1 53090 92 - 1
UUUUCCCCAACCAUUUUGGUCUGGUUUAACCAACCGAAUG----AACUGCUAU--------CGGGCUUACCCAGCUGUCAUUCUUGGGCAGUUUGCAGAUGCAC
.....(((((.......(((.(((.....))))))(((((----(...(((..--------.(((....))))))..))))))))))).....(((....))). ( -26.80)
>DroYak_CAF1 57867 94 - 1
UUUUCCCCAACCAAC----------UCAACCAACUGAUCAAACGAACUACUAUAACUACAACGGGCUUACCCAGCUGGGAUUCUGAGACAGUUUGCUGAUGCAC
..............(----------(((.(((.(((.((....)).................((.....))))).))).....)))).(((....)))...... ( -12.40)
>consensus
UUUUCCCCAACCAUUUUGGU_UGGUUUAACCAACCGAAUG____AACUGCUAU________CGGGCUUACCCAGCUGUCAUUCUUAGACAGUUUGCAGAUGCAC
..............((((((.(((.....)))))))))........((((............(((....)))(((((((.......))))))).))))...... (-14.23 = -17.35 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:16 2006