Locus 5108

Sequence ID 2L_DroMel_CAF1
Location 14,534,777 – 14,534,889
Length 112
Max. P 0.939453
window8137

overview

Window 7

Location 14,534,777 – 14,534,889
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.08
Mean single sequence MFE -21.35
Consensus MFE -19.25
Energy contribution -19.75
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.90
SVM decision value 1.30
SVM RNA-class probability 0.939453
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14534777 112 + 22407834
------AAAUAUGCGACAC--ACAAAUUGUGAUAAAUUUUAUGUUAAAGUGCAUGAAAUUAUAUGGCGACACAUUUGGGCACUCAUAAAUUUUAUUUAAACAAUUUACAAUUGUCAUUCG
------........((((.--..(((((((((((((.((((((....(((((.(.((((....((....)).)))).)))))))))))).))))))...))))))).....))))..... ( -21.50)
>DroVir_CAF1 4816 111 + 1
------AAACAUGUG-CAC--CCAAAUUGUGAUAAAUUUUAUGUUAAAGUGCAUGAAAUUAUAUGGCGACACAUUUGGGCACUCAUAAAUUUUAUUUAAACAAUUUACAAUUGUCAUUCC
------....(((.(-..(--(((((((((.(((((((((((((......)))))))))).))).))))....))))))..).))).............(((((.....)))))...... ( -22.10)
>DroEre_CAF1 61852 112 + 1
------AAAUAUGCGACAC--ACAAAUUGUGAUAAAUUUUAUGUUAAAGUGCAUGAAAUUAUAUGGCGACACAUUUGGUCACUCAUAAAUUUUAUUUAAACAAUUUACAAUUGUCAUUCG
------........((((.--..(((((((....((((((((((......)))))))))).(((((.(((.(....)))).).))))............))))))).....))))..... ( -21.00)
>DroYak_CAF1 57207 118 + 1
UACAAGAAAUAUGCGACAC--ACAAAUUGUGAUAAAUUUUAUGUUAAAGUGCAUGAAAUUAUAUGGCGACACAUUUGGGCACUCAUAAAUUUUAUUUAAACAAUUUACAAUUGUCAUUCG
..............((((.--..(((((((((((((.((((((....(((((.(.((((....((....)).)))).)))))))))))).))))))...))))))).....))))..... ( -21.50)
>DroMoj_CAF1 6076 113 + 1
------AAACAUGUG-CACACACAAAUUGUGAUAAAUUUUAUGUUAAAGUGCAUGAAAUUAUAUGGCGACACAUUUGGGCACUCAUAAAUUUUAUUUAAACAAUUUACAAUUGUCAUUCG
------......(((-(.((......((((.(((((((((((((......)))))))))).))).))))......)).)))).................(((((.....)))))...... ( -19.70)
>DroPer_CAF1 76481 114 + 1
------AAAUAUGCGACACACACAAAUUGUGAUAAAUUUUAUGUUAAAGUGCAUGAAAUUAUAUGGCGACACAUUUGGGCACUCAUAAAUUUUAUUUAAACAAUUUACAAUUGUCAUUCG
------........((((.....(((((((((((((.((((((....(((((.(.((((....((....)).)))).)))))))))))).))))))...))))))).....))))..... ( -22.30)
>consensus
______AAAUAUGCGACAC__ACAAAUUGUGAUAAAUUUUAUGUUAAAGUGCAUGAAAUUAUAUGGCGACACAUUUGGGCACUCAUAAAUUUUAUUUAAACAAUUUACAAUUGUCAUUCG
..............((((.....(((((((((((((.((((((....(((((.(.((((....((....)).)))).)))))))))))).))))))...))))))).....))))..... (-19.25 = -19.75 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:15 2006