| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,534,568 – 14,534,668 |
| Length | 100 |
| Max. P | 0.944588 |
| Location | 14,534,568 – 14,534,668 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 74.68 |
| Mean single sequence MFE | -17.76 |
| Consensus MFE | -14.54 |
| Energy contribution | -14.93 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.944588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14534568 100 + 22407834 CCUCCAAAUUCACCCCUGCCACUGC-----------CCACCAGUUCUCAAUAUUCUGCCAGGGCGAUAAAUUGUGCAAUAAAUUUCAAUUACUGUUAUUUCGCCCGGCAAA ................((((((((.-----------....))))................((((((..(((...(((.(((.......))).))).))))))))))))).. ( -19.70) >DroSec_CAF1 66538 101 + 1 CCUCCCC-CUCCCCACUGCUCCUGCCC---------CCACCAGUUCUCAAUAUUCUGCCAGGGCGAUAAAUUGUGCAAUAAAUUUCAAUUACUGUUAUUUCGCCCGGCAAA .......-.........((....))..---------...................((((.((((((..(((...(((.(((.......))).))).))))))))))))).. ( -18.20) >DroSim_CAF1 52246 101 + 1 CUUCCUC-CUCCCCACUGCUCCUGCCC---------CCACCAGUUCUCAAUAUUCUGCCAGGGCGAUAAAGUGUGCAAUAAAUUUCAAUUACUGUUAUUUCGCCCGGCAAA .......-.........((....))..---------...................((((.((((((...((((................))))......)))))))))).. ( -19.09) >DroEre_CAF1 61658 85 + 1 --UAUGUAU------CUGCGCCUGCCCC------------------ACAAUAUUCUGCCAGGGCGAUAAAUUGUGCAAUAAAUUUCAAUUACUGCUAUUCCGCCCGGCAAA --..(((..------..((....))...------------------)))......((((.(((((...(((...(((.(((.......))).))).))).))))))))).. ( -17.60) >DroYak_CAF1 56991 105 + 1 CCUAUGUAU------CUCCGCCUGCCCCUUGUCAGUCCGCCAGUUCUCAAUAUUCUGCCAGGGCGAUAAAUUGUGCAAUAAAUUUCAAUUACUGUUAUUUCGCCCGGCAAA .........------.......((((...((.(((...................))).))((((((..(((...(((.(((.......))).))).))))))))))))).. ( -18.11) >DroAna_CAF1 4510 80 + 1 CCU------------CCGCUCCUGCGC---------CCCC---------UCUGUCUGUCGCUGCGAUAAAUUGUGCAAUAAAUUUCAAUUAUAGUUAUUUCGC-CGGCAAA ...------------.(((....))).---------....---------......(((((..((((..(((((((..............)))))))...))))-))))).. ( -13.84) >consensus CCUCCGC_U______CUGCUCCUGCCC_________CCACCAGUUCUCAAUAUUCUGCCAGGGCGAUAAAUUGUGCAAUAAAUUUCAAUUACUGUUAUUUCGCCCGGCAAA .......................................................((((.((((((........(((.(((.......))).)))....)))))))))).. (-14.54 = -14.93 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:14 2006