Locus 5105

Sequence ID 2L_DroMel_CAF1
Location 14,532,138 – 14,532,233
Length 95
Max. P 0.561464
window8133

overview

Window 3

Location 14,532,138 – 14,532,233
Length 95
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 84.29
Mean single sequence MFE -30.83
Consensus MFE -24.95
Energy contribution -25.48
Covariance contribution 0.53
Combinations/Pair 1.04
Mean z-score -1.57
Structure conservation index 0.81
SVM decision value 0.06
SVM RNA-class probability 0.561464
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14532138 95 + 22407834
AGGUGUUGCCUUCGUUGAGGUUACAACCG---CUGC----------ACCAACUCUGGCUGCUCAGCCAACUGGAUGCUGAUCGUAAAUCGAUCUGGCUAACCAUGUGC
.(((((.(((((....))))).)).))).---..((----------((......(((((....)))))..(((..((((((((.....))))).)))...))).)))) ( -31.90)
>DroSec_CAF1 64142 95 + 1
AGGUGUUGCCUUCAUUGAGGUUACAGCCG---CUCC----------ACCAACUCUGGCUGCUCAGCCAACUGGAUGCUGAUCGUAAAUCGAUCUGGCUAACCAUGUGC
.(((((.(((((....))))).))(((((---((((----------(.......(((((....)))))..)))).)).(((((.....))))).)))).)))...... ( -32.10)
>DroSim_CAF1 49497 95 + 1
AGGUGUUGCCUUCGUUGAGGUUACAGCCG---CUCC----------ACCAACUCUGGCUGCUCAGCCAACUGGAUGCUGAUCGUAAAUCGAUCUGGCUAACCAUGUGC
.(((((.(((((....))))).))(((((---((((----------(.......(((((....)))))..)))).)).(((((.....))))).)))).)))...... ( -32.10)
>DroEre_CAF1 59463 108 + 1
AGGUGUUGCCUUCGCUGAGGUUACAGCCAACCGCCAAAAGCCAACAGCCAACUCUGGCUGCUCAGCCAACUGGAUGCUGAUCGUAAAUCGAUCUGGCUAACCAUGUGC
.(((((.(((((....))))).))(((((.........(((...((((((....)))))).((((....))))..)))(((((.....)))))))))).)))...... ( -34.30)
>DroYak_CAF1 54600 98 + 1
AGGUGUUGCCUUCGUUGAGGUUACAGCCAACUCUCC----------ACCAACUUUGGCUGCUCAGCCAACUGGAUGCUGAUCGUAAAUCGAUCUGGCUAACCAUUUGC
.(((((.(((((....))))).))(((((.......----------.(((...((((((....)))))).))).....(((((.....)))))))))).)))...... ( -32.00)
>DroAna_CAF1 1593 81 + 1
AGGUGUUGCUCUCGAUGAGGUUACAACCG---UUC--------------------GGC----CGGCCAACUGGAUGCUGAUCGUAAAUCGAUCCGGGUAACCAUGUGC
..(.((((((((((((..(((....)))(---.((--------------------(((----...((....))..))))).)....)))))...))))))))...... ( -22.60)
>consensus
AGGUGUUGCCUUCGUUGAGGUUACAGCCG___CUCC__________ACCAACUCUGGCUGCUCAGCCAACUGGAUGCUGAUCGUAAAUCGAUCUGGCUAACCAUGUGC
.(((((.(((((....))))).))).))..........................(((((....)))))..(((..((((((((.....))))).)))...)))..... (-24.95 = -25.48 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:12 2006