Locus 5101

Sequence ID 2L_DroMel_CAF1
Location 14,529,119 – 14,529,222
Length 103
Max. P 0.610576
window8119

overview

Window 9

Location 14,529,119 – 14,529,222
Length 103
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 86.88
Mean single sequence MFE -40.33
Consensus MFE -27.20
Energy contribution -27.38
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -1.73
Structure conservation index 0.67
SVM decision value 0.16
SVM RNA-class probability 0.610576
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14529119 103 - 22407834
CUUGGGAGUUGGGGUUUUUAGGUCUGG------------GUCUGGGCUAUAUGGUCGGGGUAUGAGACGAGGUCCCA---AGACCCAGUCUGUGUGCCUGGGUAACUUAUCUCGGCUU
.....((((((((((.(((((((((((------------(((((((((...(.(((.........))).))).))).---)))))))).......)))))))......)))))))))) ( -35.61)
>DroSec_CAF1 61124 103 - 1
CUUGGGAGUUGGGGCUUUUAGGUCUGG------------GUCUGGGCUAUAUGGUCGGGGUCUGAGACGGGGUCCCA---AGACCCAGUCUGUGUGCCUGGGUAACUUAUCUCGGCUU
.(((((..((((((((((...((((((------------..((.((((....)))).))..)).)))))))))))))---)..))))).......(((.(((((...))))).))).. ( -42.20)
>DroSim_CAF1 46515 103 - 1
CUUGGGAGUUGGGGUUUUUAGGUCUGG------------GUCUGGGCUAUAUGGUCGGGGUCUGAGACGGGGUCCCA---AGACCCAGUCUGUGUGCCUGGGUAACUUAUCUCGGCUU
.....((((((((((.(((((((((((------------((((.((((....))))(((..((......))..))).---)))))))).......)))))))......)))))))))) ( -40.11)
>DroYak_CAF1 51300 118 - 1
CUUCAGAGUUGGGGUUUUUAGGUCUGGGUCUGGGUCUGGGUCUGGGCUAUAUGCUGGGCAUCUGAGACGGGGUCUGAGACGGAGCCAGUGUGUGUGCCUGGGUAACUUAUCUCGGCUU
.....((((((((((.(((((..((......))..)))))((..(((((((((((((.(.(((.((((...)))).)))..)..)))))))))).)))..))......)))))))))) ( -43.40)
>consensus
CUUGGGAGUUGGGGUUUUUAGGUCUGG____________GUCUGGGCUAUAUGGUCGGGGUCUGAGACGGGGUCCCA___AGACCCAGUCUGUGUGCCUGGGUAACUUAUCUCGGCUU
.....(((((((((....(((((.................((..(((.((((((...((((((..(((...)))......))))))...)))))))))..))..)))))))))))))) (-27.20 = -27.38 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:59 2006