Locus 5100

Sequence ID 2L_DroMel_CAF1
Location 14,528,813 – 14,528,922
Length 109
Max. P 0.787729
window8118

overview

Window 8

Location 14,528,813 – 14,528,922
Length 109
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 92.48
Mean single sequence MFE -25.70
Consensus MFE -19.68
Energy contribution -20.56
Covariance contribution 0.88
Combinations/Pair 1.08
Mean z-score -1.93
Structure conservation index 0.77
SVM decision value 0.58
SVM RNA-class probability 0.787729
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14528813 109 + 22407834
UCCAUAUGCAAUCCUCGAUGCGGUCAUCA-CACUGCUGAGAGAUUGCAUAUUCAGAUGGGUUACCCGAUCCCAAAGUAACAAAUCAAUUCCACUCAUCCGCAAGUCAUCA------
...((((((((((((((..(((((.....-.))))))))).))))))))))...((((((((((...........)))))..................(....)))))).------ ( -29.40)
>DroSec_CAF1 60818 109 + 1
UCCAUAUGCAAUCCUCGAUGCGGUCAUCA-CACUGCUGAGAGAUUGCACAUUCAGAUGGGCUACCCGAUCCCAAAGUAACAAAUCAAUUCCACUCAUCCGCAAGUCAUCA------
......(((((((((((..(((((.....-.))))))))).)))))))......((((((....))................................(....).)))).------ ( -23.10)
>DroSim_CAF1 46209 109 + 1
UCCAUAUGCAAUCCUCGAUGCGGUCAUCA-CACUGCUGAGAGAUUGCAUAUUCAGAUGGGCUACCCGAUCCCAAAGUAACAAAUCAAUUCCACUCAUCCGCAAGUCAUCA------
...((((((((((((((..(((((.....-.))))))))).))))))))))...((((((....))................................(....).)))).------ ( -26.20)
>DroEre_CAF1 55931 114 + 1
UCCAUAUGCAGUUCUCGAUGCGGUCAUCAGCACGACUGAUAGAUUGCAUAUUCAAAUGGGCUACCCGAUCCCAAAGUAACAAAUCAAUUCCACUUAUCCGCAAGUCAUCCCGAG--
.............(((((((((((((((((.....))))).)))))))).......((((.........)))).........................(....)......))))-- ( -21.70)
>DroYak_CAF1 50980 115 + 1
UCCAUAUGCAAUCCUCGAUGCGGUCAUCA-CACGUCUGAGAGAUUGCAUAUUCAGAUGGGUUACCCGAUCCCAAAGUAACAAAUCAAUUCCACUCAUCCGCAAGUCAUCCCGAGAG
...(((((((((((((((((.(.......-).)))).))).))))))))))...(((..(((((...........)))))..))).......(((...(....)((.....))))) ( -28.10)
>consensus
UCCAUAUGCAAUCCUCGAUGCGGUCAUCA_CACUGCUGAGAGAUUGCAUAUUCAGAUGGGCUACCCGAUCCCAAAGUAACAAAUCAAUUCCACUCAUCCGCAAGUCAUCA______
...((((((((((((((..(((((.......))))))))).)))))))))).....((((.........)))).........................(....)............ (-19.68 = -20.56 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:58 2006