Locus 5099

Sequence ID 2L_DroMel_CAF1
Location 14,528,267 – 14,528,378
Length 111
Max. P 0.987223
window8116 window8117

overview

Window 6

Location 14,528,267 – 14,528,378
Length 111
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.21
Mean single sequence MFE -37.54
Consensus MFE -32.44
Energy contribution -33.44
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.65
Structure conservation index 0.86
SVM decision value 2.07
SVM RNA-class probability 0.987223
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14528267 111 + 22407834
GCUGUCAGUGCGUUGGCUGUCAAGUGUCAAAAACAUUUGCAGCGUGCAACGCG---------CCAAAUGCAAAAUGCAAAUGCACUUACGAACGUCUCUCGCCAAAUGCCUGACAAUGAC
..((((((.((((((((.((.(((((.......(((((((((((.....)))(---------(.....))....)))))))))))))))((.......))))).)))))))))))..... ( -36.11)
>DroPse_CAF1 65846 120 + 1
GCUGUCAGUGCGUUGGCUGUCAAGUGUCAAAAACAUUUGCAACGCGCUCAGCGCCGUGCGGGCAAAAUGCAAAAUGCAAAUGCACUUACGAACGUCUCUCGCCAAAUGCCUGACAAUGAC
..((((((.((((((((.((.(((((.......((((((((.(((((........))))).((.....))....)))))))))))))))((.......))))).)))))))))))..... ( -40.11)
>DroSim_CAF1 45671 111 + 1
GCUGUCAGUGCGUUGGCUGUCAAGUGUCAAAAACAUUUGCAGCGUGCAACGCG---------CCAAAUGCAAAAUGCAAAUGCACUUACGAACGUCUCUCGCCAAAUGCCUGACAAUGAC
..((((((.((((((((.((.(((((.......(((((((((((.....)))(---------(.....))....)))))))))))))))((.......))))).)))))))))))..... ( -36.11)
>DroEre_CAF1 55363 111 + 1
GCUGUCAGUGCGUUGGCUGUCAAGUGUCAGAAACAUUUGCAGCUUGCAACGCG---------CCAAAUGCAAAAUGCAAAUGCACUUACGAACGUCUCUCGCCAAAUGCCUGACAAUGAC
..((((((.((((((((.((.(((((.......((((((((..(((((.....---------.....)))))..)))))))))))))))((.......))))).)))))))))))..... ( -36.41)
>DroYak_CAF1 50415 111 + 1
GCUGUCAGUGCGUUGGCUGUCAAGUGUCAGAAACAUUUGCAGCUUGCAACGCG---------CCAAAUGCAAAAUGCAAAUGCACUUACGAACGUCUCUCGCCAAAUGCCUGACAAUGAC
..((((((.((((((((.((.(((((.......((((((((..(((((.....---------.....)))))..)))))))))))))))((.......))))).)))))))))))..... ( -36.41)
>DroPer_CAF1 69597 120 + 1
GCUGUCAGUGCGUUGGCUGUCAAGUGUCAAAAACAUUUGCAACGCGCUCAGCGCCGUGCGGGCAAAAUGCAAAAUGCAAAUGCACUUACGAACGUCUCUCGCCAAAUGCCUGACAAUGAC
..((((((.((((((((.((.(((((.......((((((((.(((((........))))).((.....))....)))))))))))))))((.......))))).)))))))))))..... ( -40.11)
>consensus
GCUGUCAGUGCGUUGGCUGUCAAGUGUCAAAAACAUUUGCAGCGUGCAACGCG_________CCAAAUGCAAAAUGCAAAUGCACUUACGAACGUCUCUCGCCAAAUGCCUGACAAUGAC
..((((((.((((((((.((.(((((.......((((((((...((((....(((.....)))....))))...)))))))))))))))((.......))))).)))))))))))..... (-32.44 = -33.44 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 14,528,267 – 14,528,378
Length 111
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.21
Mean single sequence MFE -38.83
Consensus MFE -34.09
Energy contribution -34.87
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.91
Structure conservation index 0.88
SVM decision value 1.23
SVM RNA-class probability 0.933313
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14528267 111 - 22407834
GUCAUUGUCAGGCAUUUGGCGAGAGACGUUCGUAAGUGCAUUUGCAUUUUGCAUUUGG---------CGCGUUGCACGCUGCAAAUGUUUUUGACACUUGACAGCCAACGCACUGACAGC
....((((((((((((((.((((.....)))))))))))...(((.....))).....---------.((((((...(((((((.((((...)))).))).)))))))))).))))))). ( -38.20)
>DroPse_CAF1 65846 120 - 1
GUCAUUGUCAGGCAUUUGGCGAGAGACGUUCGUAAGUGCAUUUGCAUUUUGCAUUUUGCCCGCACGGCGCUGAGCGCGUUGCAAAUGUUUUUGACACUUGACAGCCAACGCACUGACAGC
....(((((((((..(((((....((.((...((((.(((((((((...(((.(((.((((....)).)).))).))).))))))))).))))..))))....))))).)).))))))). ( -40.10)
>DroSim_CAF1 45671 111 - 1
GUCAUUGUCAGGCAUUUGGCGAGAGACGUUCGUAAGUGCAUUUGCAUUUUGCAUUUGG---------CGCGUUGCACGCUGCAAAUGUUUUUGACACUUGACAGCCAACGCACUGACAGC
....((((((((((((((.((((.....)))))))))))...(((.....))).....---------.((((((...(((((((.((((...)))).))).)))))))))).))))))). ( -38.20)
>DroEre_CAF1 55363 111 - 1
GUCAUUGUCAGGCAUUUGGCGAGAGACGUUCGUAAGUGCAUUUGCAUUUUGCAUUUGG---------CGCGUUGCAAGCUGCAAAUGUUUCUGACACUUGACAGCCAACGCACUGACAGC
....((((((((((((((.((((.....)))))))))))...(((.....))).....---------.((((((...(((((((.((((...)))).))).)))))))))).))))))). ( -38.20)
>DroYak_CAF1 50415 111 - 1
GUCAUUGUCAGGCAUUUGGCGAGAGACGUUCGUAAGUGCAUUUGCAUUUUGCAUUUGG---------CGCGUUGCAAGCUGCAAAUGUUUCUGACACUUGACAGCCAACGCACUGACAGC
....((((((((((((((.((((.....)))))))))))...(((.....))).....---------.((((((...(((((((.((((...)))).))).)))))))))).))))))). ( -38.20)
>DroPer_CAF1 69597 120 - 1
GUCAUUGUCAGGCAUUUGGCGAGAGACGUUCGUAAGUGCAUUUGCAUUUUGCAUUUUGCCCGCACGGCGCUGAGCGCGUUGCAAAUGUUUUUGACACUUGACAGCCAACGCACUGACAGC
....(((((((((..(((((....((.((...((((.(((((((((...(((.(((.((((....)).)).))).))).))))))))).))))..))))....))))).)).))))))). ( -40.10)
>consensus
GUCAUUGUCAGGCAUUUGGCGAGAGACGUUCGUAAGUGCAUUUGCAUUUUGCAUUUGG_________CGCGUUGCACGCUGCAAAUGUUUUUGACACUUGACAGCCAACGCACUGACAGC
....((((((((((((((.((((.....)))))))))))...(((.....)))...............((((((...(((((((.((((...)))).))).)))))))))).))))))). (-34.09 = -34.87 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:57 2006