Locus 5095

Sequence ID 2L_DroMel_CAF1
Location 14,523,665 – 14,523,777
Length 112
Max. P 0.981773
window8110

overview

Window 0

Location 14,523,665 – 14,523,777
Length 112
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 88.28
Mean single sequence MFE -34.46
Consensus MFE -27.16
Energy contribution -27.36
Covariance contribution 0.20
Combinations/Pair 1.15
Mean z-score -2.51
Structure conservation index 0.79
SVM decision value 1.90
SVM RNA-class probability 0.981773
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14523665 112 - 22407834
AAGUGUUUUUU---UCUUUCGUUAAAGAGGAAACUCGUUGACUGCUUUACGCUGAGAAAUUACUUGGCCCAUGGGUUUUCGUUGUCUUUCGGCGAGAAUUCCUCCACCCAAUGCA
(((((..((((---((....(((((.(((....))).))))).((.....)).)))))).))))).((...(((((((((((((.....))))))))........)))))..)). ( -31.20)
>DroSec_CAF1 55564 112 - 1
AAGCGUUCUUU---UUUUUCGUUAAAGAGGAAACUCGUUGACUGCUUUACGCUGAGAAAUUACUUGGCCCAGGGGUUUUCGUUGUCUUUCGGCGAGAAUUCCUCCACCCAAUGCA
..(((((....---(((((((((((.(((....))).))))).((.....)).)))))).....(((...((((((((((((((.....)))))))))))))))))...))))). ( -36.90)
>DroSim_CAF1 40939 115 - 1
AAGCGUUUUUUUUUUUUUUCGUUAAAGAGGAAACUCGUUGACUGCUUUACGCUGAGAAAUUACUUGGGCCAGGGGUUUUUGUUGUCUUUCGGCGAGAAUUCCUCCACCCAAUGCA
..(((((.......(((((((((((.(((....))).))))).((.....)).))))))......(((..((((((((((((((.....))))))))))))))...)))))))). ( -38.20)
>DroEre_CAF1 51715 106 - 1
GUG------CU---UUUUUCUCCAAAGAGGAAACUCGUUGACUGCUUUGCGCUGAGAAAUUACUUGGCCCAUGGGUUUGCGUUGUCUUUCGGCGCGAACUCCGCCACCCAAUGCA
.((------(.---..(((((((((.(((....))).)))...((.....)).)))))).....((((....((((((((((((.....)))))))))))).))))......))) ( -36.20)
>DroYak_CAF1 46095 105 - 1
GC-------UU---UUUUUCGCUAAAGAGGAAACUCGCUGACUGCUUUACGCUGAGAAAUUACUUGGCCCAUGGGUUUUCGUUGUCUUUCGGCGAGAAUUCCCCCACCCAAUGCA
((-------..---(((((((((((((((....)))((.....)))))).)).))))))....((((....(((((((((((((.....)))))))))....)))).)))).)). ( -29.80)
>consensus
AAG_GUU_UUU___UUUUUCGUUAAAGAGGAAACUCGUUGACUGCUUUACGCUGAGAAAUUACUUGGCCCAUGGGUUUUCGUUGUCUUUCGGCGAGAAUUCCUCCACCCAAUGCA
....................(((((.(((....))).))))).((.....((..((......))..))....((((((((((((.....))))))))))))...........)). (-27.16 = -27.36 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:50 2006