Locus 5094

Sequence ID 2L_DroMel_CAF1
Location 14,522,761 – 14,522,864
Length 103
Max. P 0.996319
window8109

overview

Window 9

Location 14,522,761 – 14,522,864
Length 103
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 76.01
Mean single sequence MFE -37.04
Consensus MFE -18.44
Energy contribution -17.96
Covariance contribution -0.48
Combinations/Pair 1.40
Mean z-score -2.67
Structure conservation index 0.50
SVM decision value 2.68
SVM RNA-class probability 0.996319
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14522761 103 + 22407834
UGUACCCGCUGACUCUGGACUCCCGAC-------UCCCGACUCCGG--UUUCCUUACUCUGAUCCCAAACGAAGCCCCCGACCGCUGGGUUUCUGGAGUC-------AGCACAGCAUCU
.......((((((((..((..(((...-------..........((--..((........))..))......(((........))))))..))..)))))-------)))......... ( -32.60)
>DroSec_CAF1 54393 103 + 1
UGUACCCGCUGACUCUGGACUCCCGAC-------UCCCAACUCCGG--UUUCCUUACUCUGAUCUCAAGCGAAGCCCACGACCGCUGGGUUUCUGGAGUC-------AGCACAGCAUCU
.......((((((((((((..((.((.-------.......)).))--..))).................(((((((((....).)))))))).))))))-------)))......... ( -34.00)
>DroSim_CAF1 40038 110 + 1
UGUACCCGCUGACUCUGGACUCCCGACUCUCAACUCCCAACUCCGG--UUUCCUUACUCUGAUCCCAAGCGCAGUGCCCGACCGCUGGGUUUCUGGAGUC-------AGCACAGCAUCU
.......((((((((..((..(((....................((--..((........))..)).((((..((.....)))))))))..))..)))))-------)))......... ( -34.20)
>DroEre_CAF1 50941 98 + 1
UGUACCCGCUGACUCCGGGCUCCCGACUUCCAACUGGCAACUCCUUACUCUCCUUACUCUGAUCC-------------CGACCGCUGGGAUCCUGGAGUG-------GGC-GGGCAUCU
....((((((.(((((((......((.((((....)).)).)).................(((((-------------((.....)))))))))))))).-------)))-)))..... ( -36.70)
>DroYak_CAF1 45183 116 + 1
UGUACCCGCUGACUCCGGGCUCCCGACUCCCGACUCUCGACUCCCAACU--UCAUGCUCUGAUCCCAAGUAAGGCCCCCGACCGCUGGGAUUCUGGAGUCUGGAGUCAGG-CGGCAUCU
.....((((((((((((((((((.((.(((((.(..(((...((..(((--(((.....))).....)))..))....)))..).))))).)).)))))))))))))).)-)))..... ( -47.70)
>consensus
UGUACCCGCUGACUCUGGACUCCCGACU__C_ACUCCCAACUCCGG__UUUCCUUACUCUGAUCCCAAGCGAAGCCCCCGACCGCUGGGUUUCUGGAGUC_______AGCACAGCAUCU
.......((((((((((((..(((............((......))..........................(((........))))))..)))))))))............))).... (-18.44 = -17.96 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:49 2006