Locus 5092

Sequence ID 2L_DroMel_CAF1
Location 14,521,172 – 14,521,281
Length 109
Max. P 0.803589
window8106

overview

Window 6

Location 14,521,172 – 14,521,281
Length 109
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 87.61
Mean single sequence MFE -28.00
Consensus MFE -19.09
Energy contribution -20.77
Covariance contribution 1.69
Combinations/Pair 1.14
Mean z-score -2.31
Structure conservation index 0.68
SVM decision value 0.62
SVM RNA-class probability 0.803589
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14521172 109 - 22407834
AGCAAAAAUGUGAGAAACCUAAAAAUGAUUGAGUAUGAAAUGCAGUCGCAGUUUCGGUUAGAGCGAUGGAGCUGAAAUCGAAAAGCUCCUUUCAGUUUCACCAAGCUCU
...............((((.(((..((((((.((.....)).))))))...))).))))(((((..(((((((((((..((.....)).)))))))))))....))))) ( -26.20)
>DroSec_CAF1 52799 103 - 1
AGCAAAAAUGUGAGAAACCUAAAAAUGAUUGAGUAUGAAAUUCAGUCGCAGUUUUGG------UGCUGGAGCCAAAAUCGAAAAGCUGCUUAUAGUUUCAACAAGCUCU
........(((..(((((........((((((((.....))))))))((((((((((------(..((....))..))))))..))))).....))))).)))...... ( -25.50)
>DroSim_CAF1 38439 109 - 1
AGCAAAAAUGUGAGAAACGUAAAAAUGAUUGAGUAUGAAAUUCAGUCGCAGUUUUGGUUAGAGUGCUGGAGCCAAAAUCGAAAAGCUGCUUAUAGUUUCAACAAGCUAU
(((.....(((..(((((........((((((((.....))))))))((((((((((((...(.((....)))..)))))))..))))).....))))).))).))).. ( -25.90)
>DroYak_CAF1 43603 108 - 1
AGCAAAAAUGUG-GAAACGUAAGAGUGAUUGAGUAUGAAACUCAGUCGCAGUUUUGGCUAGAGCGCUGGAGCUAAAACCGAAAAGCUCCUUAUCGCUUCAACAAGCUCU
..(((((((((.-...))))....((((((((((.....))))))))))..)))))(((.(((((..((((((..........))))))....))))).....)))... ( -34.40)
>consensus
AGCAAAAAUGUGAGAAACCUAAAAAUGAUUGAGUAUGAAAUUCAGUCGCAGUUUUGGUUAGAGCGCUGGAGCCAAAAUCGAAAAGCUCCUUAUAGUUUCAACAAGCUCU
.............(((((........((((((((.....))))))))((((((((((((..(((......)))..)))))))..))))).....))))).......... (-19.09 = -20.77 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:46 2006