Locus 5091

Sequence ID 2L_DroMel_CAF1
Location 14,520,759 – 14,520,857
Length 98
Max. P 0.534014
window8105

overview

Window 5

Location 14,520,759 – 14,520,857
Length 98
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 87.01
Mean single sequence MFE -31.60
Consensus MFE -19.04
Energy contribution -20.20
Covariance contribution 1.16
Combinations/Pair 1.10
Mean z-score -2.57
Structure conservation index 0.60
SVM decision value 0.00
SVM RNA-class probability 0.534014
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14520759 98 - 22407834
-----------GUGCAACGUAUAACAAAUUGCACAGCAGCAACAGCAACAGCAGCAACUCUGC--UGUUUCUGACAGCGAAAGCAUUGUUGGCUGACAGCUCGAAAAGGGC
-----------((((((...........)))))).(((((..(((.((((((((.....))))--)))).)))...((....)).......)))).).((((.....)))) ( -35.30)
>DroPse_CAF1 56926 110 - 1
CAGCAAGAGGAUUGCAACGUAUAACAAAUUGCACAGCAACAGCAGCAGCAGCUACAACUCUGCUCUGUUUCUGACAGUGAAAGCAUUGUUGGAUGACAGCUCGAAAAGGG-
..((((.....))))...(((........)))..((((((((.(((((.((......))))))))))))((..((((((....))))))..)).....))).........- ( -29.70)
>DroSec_CAF1 52389 95 - 1
-----------GUGCAACGUAUAACAAAUUGCACAGCAG---CAGCAACAGCAACAACUCUGC--UGUUUCUGACAGCGAAAGCAUUGUUGGCUGACAGCUCGAAAAGGGC
-----------((((((...........)))))).((((---(((.(((((((.......)))--)))).))((((((....))..)))).)))).).((((.....)))) ( -30.50)
>DroSim_CAF1 38026 98 - 1
-----------GUGCAACGUAUAACAAAUUGCACAGCAGCAGCAGCAACAGCAACAACUCUGC--UGUUUCUGACAGCGAAAGCAUUGUUGGCUGACAGCUCGAAAAGGGC
-----------((((((...........)))))).(((((.((((.(((((((.......)))--)))).))).).((....)).......)))).).((((.....)))) ( -32.80)
>DroPer_CAF1 60669 110 - 1
CAGCAAGAGGAUUGCAACGUAUAACAAAUUGCACAGCAACAGCAGCAGCAGCUACAACUCUGCUCUGUUUCUGACAGUGAAAGCAUUGUUGGAUGACAGCUCGAAAAGGG-
..((((.....))))...(((........)))..((((((((.(((((.((......))))))))))))((..((((((....))))))..)).....))).........- ( -29.70)
>consensus
___________GUGCAACGUAUAACAAAUUGCACAGCAGCAGCAGCAACAGCAACAACUCUGC__UGUUUCUGACAGCGAAAGCAUUGUUGGCUGACAGCUCGAAAAGGGC
...........((((((...........)))))).(((((..(((((((((.((((.........)))).)))...((....)).)))))))))).).((((.....)))) (-19.04 = -20.20 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:45 2006