Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,528,220 – 1,528,321 |
Length | 101 |
Max. P | 0.975800 |
Location | 1,528,220 – 1,528,321 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 76.93 |
Mean single sequence MFE | -24.47 |
Consensus MFE | -15.15 |
Energy contribution | -15.62 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.10 |
Mean z-score | -2.34 |
Structure conservation index | 0.62 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.975800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1528220 101 - 22407834 -CAUCUUGGCGAACAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUGCCACUGCCUUCCCGUUUA-CAACUGCC-----GAG--UUGCA----CU -((.(((((((..(((((((((((....((((((.............))))))..))))))))))).............((...-..))))))-----)))--.))..----.. ( -25.22) >DroVir_CAF1 11839 106 - 1 GAAACAUGGCGCAGAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUACCAUUUCCUUCCCGUUUA-CAACUGCC-----GGU--CUCCUGAUCCU .......(((((((((....))))))..((((((.............)))))).((((((.........)))))).........-.....)))-----(((--(....)))).. ( -21.92) >DroWil_CAF1 14122 104 - 1 -UGUCUUGGUGCCCAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUACCAUUUCCUUCCCGUUUCCCAAAUGUC-----GAGCGUUACA----UA -.....(((((....(((((((((....((((((.............))))))..)))))))))))))).........(((((..(....)..-----))))).....----.. ( -20.02) >DroMoj_CAF1 13576 95 - 1 GGAACAUGGCGCAAAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUACCAUUUCCUUCCCUCA--------GCC-----AG---CUACUGAA--- ((((.((((.....((((((((((....((((((.............))))))..)))))))))).)))))))).....(((--------(..-----..---...)))).--- ( -22.52) >DroAna_CAF1 34903 94 - 1 -CUUCUUGGUAAAAAAGUUUUUCUGCUCCACUUAUGCCGAAACUAAUUAAGUGCAGGAAAAAGUUGCCAUUGCCAUCCCGGUUG-CAACUGCC--------------A----CA -.....((((.......(((((((((...(((((.............))))))))))))))((((((....(((.....))).)-))))))))--------------)----.. ( -24.22) >DroPer_CAF1 39120 106 - 1 -CUUCUGGGCGGACAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUGCCAUUUCCUUCCCGUUUA-CAACUGCCACGCAGCG--UGGCA----CU -.....(((.((((((((((((((....((((((.............))))))..))))))))))).....)))..))).....-....(((((((...))--)))))----.. ( -32.92) >consensus _CAUCUUGGCGCACAACUUUUUCUGCUCCACUUAUGCCCAAACUAAUUAAGUGCAGGAAAAAGUUACCAUUUCCUUCCCGUUUA_CAACUGCC_____GAG__UUACA____CU ......((((....((((((((((....((((((.............))))))..))))))))))))))............................................. (-15.15 = -15.62 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:52 2006