Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,518,606 – 14,518,704 |
Length | 98 |
Max. P | 0.994749 |
Location | 14,518,606 – 14,518,704 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.53 |
Mean single sequence MFE | -32.96 |
Consensus MFE | -24.16 |
Energy contribution | -25.32 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.20 |
Structure conservation index | 0.73 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813905 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14518606 98 + 22407834 UUA----------------------AAAUACUUGUUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUCUUAAUUUGAU ...----------------------............((((((((((((.......)))))((((((.((...)).)))).)).................)))))))............. ( -32.20) >DroSec_CAF1 50205 104 + 1 ------------CGUGCAUGAAUUCAACCAUGGUUUGGCUCCGGCCGCGCAG--AUGGCGG--AGGUCGUGCUGGAGAGGGACAUUCUACCACUGAACCACCGAUGCUGCUUAAAUUGAU ------------...((((((.(((..((((.((.((((....)))).))..--))))..)--)).))))))(((((((.....)))).))).........((((.........)))).. ( -28.60) >DroSim_CAF1 35849 120 + 1 UUAAUAAUAAUACAGGUAUUAAUAAAAAUAUUGGUUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUGCUUAAAUUGAU (((((..(((((....)))))...........(((..((((((((((((.......)))))((((((.((...)).)))).)).................))))))).)))...))))). ( -34.80) >DroEre_CAF1 46950 98 + 1 UUA----------------------AAAAUUUCGUUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUGCUUAUUUUAGU ...----------------------(((((...((..((((((((((((.......)))))((((((.((...)).)))).)).................))))))).))..)))))... ( -33.50) >DroYak_CAF1 40937 98 + 1 UAA----------------------AAAAUUGUGUUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUGCUUAAUUUGAU ...----------------------.((((((.((..((((((((((((.......)))))((((((.((...)).)))).)).................))))))).)).))))))... ( -35.70) >consensus UUA______________________AAAAAUUGGUUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUGCUUAAUUUGAU .....................................((((((((((((.......)))))((((((.((...)).)))).)).................)))))))............. (-24.16 = -25.32 + 1.16)
Location | 14,518,606 – 14,518,704 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.53 |
Mean single sequence MFE | -34.50 |
Consensus MFE | -30.66 |
Energy contribution | -30.86 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -1.53 |
Structure conservation index | 0.89 |
SVM decision value | 2.51 |
SVM RNA-class probability | 0.994749 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14518606 98 - 22407834 AUCAAAUUAAGAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAACAAGUAUUU----------------------UAA .............(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))............----------------------... ( -35.90) >DroSec_CAF1 50205 104 - 1 AUCAAUUUAAGCAGCAUCGGUGGUUCAGUGGUAGAAUGUCCCUCUCCAGCACGACCU--CCGCCAU--CUGCGCGGCCGGAGCCAAACCAUGGUUGAAUUCAUGCACG------------ ..........(((...(((((.((.((((((..((..(((............))).)--)..))).--))).)).)))))(((((.....))))).......)))...------------ ( -28.00) >DroSim_CAF1 35849 120 - 1 AUCAAUUUAAGCAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAACCAAUAUUUUUAUUAAUACCUGUAUUAUUAUUAA .............(((((((..((((.......))))((.(((((((...)))))))))(((((.......)))))))))))).............((.(((((....))))).)).... ( -36.80) >DroEre_CAF1 46950 98 - 1 ACUAAAAUAAGCAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAACGAAAUUUU----------------------UAA .............(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))............----------------------... ( -35.90) >DroYak_CAF1 40937 98 - 1 AUCAAAUUAAGCAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAACACAAUUUU----------------------UUA .............(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))............----------------------... ( -35.90) >consensus AUCAAAUUAAGCAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAACAAAUAUUU______________________UAA .............(((((((..((((.(((((((.........)))))))..))))...(((((.......))))))))))))..................................... (-30.66 = -30.86 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:39 2006