Locus 5086

Sequence ID 2L_DroMel_CAF1
Location 14,515,470 – 14,515,586
Length 116
Max. P 0.988773
window8095

overview

Window 5

Location 14,515,470 – 14,515,586
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.02
Mean single sequence MFE -29.87
Consensus MFE -29.69
Energy contribution -29.47
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.25
Structure conservation index 0.99
SVM decision value 2.13
SVM RNA-class probability 0.988773
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14515470 116 + 22407834
----UGGAUGCCACGUAACCUGAUAUGGUGACACUCGUCCAUGUCGUUCACGUCGUCGUCGCGGUUGCAAUCUAAUUUAUGACUUAAUUAUCAGGCCAUAUUUAAUGUGUCCAAUAAACU
----(((((((...((((((.(((((((((.....)).)))))))((..(((....))).)))))))).........((((.(((.......))).))))......)))))))....... ( -29.40)
>DroPse_CAF1 49045 120 + 1
UGUGUGGAUGCUACGUAACCCGAUAUGGUGACACUCGUCCAUGUCGUUCACGUCGUCGUCGCGGUUGCAAUCUAAUUUAUGACUUAAUUAUCGGGCCAUAUUUAAUGUGUCCAAUAAACU
.((.(((((((...((((((((((((((((.....)).))))))))...(((....)))...)))))).........((((.(((.......))).))))......)))))))....)). ( -30.30)
>DroSim_CAF1 32157 116 + 1
----UGGAUGCCACGUAACCUGAUAUGGUGACACUCGUCCAUGUCGUUCACGUCGUCGUCGCGGUUGCAAUCUAAUUUAUGACUUAAUUAUCAGGCCAUAUUUAAUGUGUCCAAUAAACU
----(((((((...((((((.(((((((((.....)).)))))))((..(((....))).)))))))).........((((.(((.......))).))))......)))))))....... ( -29.40)
>DroEre_CAF1 40570 116 + 1
----UGGAUGCCACGUAACCUGAUAUGGUGACACUCGUCCAUGUCGUUCACGUCGUCGUCGCGGUUGCAAUCUAAUUUAUGACUUAAUUAUCAGGCCAUAUUUAAUGUGUCCAAUAAACU
----(((((((...((((((.(((((((((.....)).)))))))((..(((....))).)))))))).........((((.(((.......))).))))......)))))))....... ( -29.40)
>DroYak_CAF1 36987 116 + 1
----UGGAUGCCACGUAACCUGAUAUGGUGACACUCGUCCAUGUCGUUCACGUCGUCGUCGCGGUUGCAAUCUAAUUUAUGACUUAAUUAUCAGGCCAUAUUUAAUGUGUCCAAUAAACU
----(((((((...((((((.(((((((((.....)).)))))))((..(((....))).)))))))).........((((.(((.......))).))))......)))))))....... ( -29.40)
>DroPer_CAF1 54211 120 + 1
UGUGUGGAUGCCACGUAACCCGAUAUGGUGACACUCGUCCAUGUCGUUCACGUCGUCGUCGCGGUUGCAAUCUAAUUUAUGACUUAAUUAUCGGGCCAUAUUUAAUGUGUCCAAUAAACU
...((((...))))((((((((((((((((.....)).))))))))...(((....)))...))))))...................((((.(((((((.....))).)))).))))... ( -31.30)
>consensus
____UGGAUGCCACGUAACCUGAUAUGGUGACACUCGUCCAUGUCGUUCACGUCGUCGUCGCGGUUGCAAUCUAAUUUAUGACUUAAUUAUCAGGCCAUAUUUAAUGUGUCCAAUAAACU
....(((((((...((((((.(((((((((.....)).)))))))((..(((....))).)))))))).........((((.(((.......))).))))......)))))))....... (-29.69 = -29.47 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:36 2006