Locus 5085

Sequence ID 2L_DroMel_CAF1
Location 14,514,669 – 14,514,789
Length 120
Max. P 0.664897
window8094

overview

Window 4

Location 14,514,669 – 14,514,789
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.83
Mean single sequence MFE -28.74
Consensus MFE -19.34
Energy contribution -21.87
Covariance contribution 2.53
Combinations/Pair 1.07
Mean z-score -1.87
Structure conservation index 0.67
SVM decision value 0.28
SVM RNA-class probability 0.664897
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14514669 120 - 22407834
ACAAAUUGAGCUUCAAUUGCAAUUGAAACGGCUUCGAAAUUUAAUUUGAAAAAAUGUGCGCGACUUUUAUUACAAAUGCGUGUACGGUUUUUCGAGGCCAUAUUGCUUUGCUCGCCAUAA
.......((((((((((....))))))..((((((((((....((((....))))(((((((...(((.....)))..)))))))....))))))))))..........))))....... ( -34.50)
>DroSec_CAF1 46211 120 - 1
ACAAAUUGAGCUUCAAUUGCAAUUGAAACGGCAUCGAAAUUUAAUUUGAAAAAAUGUGCGCGGCUUUUAUUACAAAUGCGUGUACGGUUUUCCGAGGCCAUAUUGCUUUGCUCGCCAUAA
.(((((((((.(((...(((..........)))..))).))))))))).......(((((((.(.(((.....))).))))))))(((....((((((......))))))...))).... ( -27.40)
>DroSim_CAF1 31345 120 - 1
ACAAAUUGAGCUUCAAUUGCAAUUGAAACGGCAUCGAAAUUUAAUUUGAAAAAAUGUGCGCGGCUUUUAUUACAAAUGCGUGUACGGUUUUCCGAGGCCAUAUUGCUUUGCUCGCCAUAA
.(((((((((.(((...(((..........)))..))).))))))))).......(((((((.(.(((.....))).))))))))(((....((((((......))))))...))).... ( -27.40)
>DroEre_CAF1 39848 93 - 1
ACAAAUUGGGCUACAAUUGCAAUCGCAACGGCUUCGAAAUUUA-UUAC-------------------------AAAUGCGUGUACGUU-UGCCGAGGCCAUAAUGCAUUGAUCACAAUAA
...(((((.....))))).((((.(((..(((((((.......-...(-------------------------(((((......))))-)).)))))))....))))))).......... ( -18.80)
>DroYak_CAF1 36193 120 - 1
ACAAAUUGAGCUACAAUUGCAAUUGAAACGGCUUCGAAAUUUCAUUUGAAAAAAUGUGCGCGGCUUUUAUUACAAAUGCGUGUACGUUUUACCGAGGCCAUAUUGCCUUGCUCGAUAUAA
....(((((((.......(((((......(((((((....(((....)))((((((((((((.(.(((.....))).)))))))))))))..)))))))..)))))...))))))).... ( -35.60)
>consensus
ACAAAUUGAGCUUCAAUUGCAAUUGAAACGGCUUCGAAAUUUAAUUUGAAAAAAUGUGCGCGGCUUUUAUUACAAAUGCGUGUACGGUUUUCCGAGGCCAUAUUGCUUUGCUCGCCAUAA
......(((((.......(((((......(((((((.......((((....))))(((((((................))))))).......)))))))..)))))...)))))...... (-19.34 = -21.87 +   2.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:35 2006