Locus 5084

Sequence ID 2L_DroMel_CAF1
Location 14,514,268 – 14,514,358
Length 90
Max. P 0.995153
window8093

overview

Window 3

Location 14,514,268 – 14,514,358
Length 90
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 79.55
Mean single sequence MFE -33.34
Consensus MFE -19.24
Energy contribution -19.32
Covariance contribution 0.08
Combinations/Pair 1.24
Mean z-score -2.97
Structure conservation index 0.58
SVM decision value 2.55
SVM RNA-class probability 0.995153
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14514268 90 - 22407834
UUGCC--GCCUU-UUGGCUUGGCAAAAUAAAAC---------GUAAUUGAAUAUCAAUUCAGGCCAACGCCGAAAUACUGAGGGGCAGGGCAA-CCAGCCUGG
.((((--.((((-((((((((((...((.....---------))..((((((....))))))))))).)))))......))))))))((((..-...)))).. ( -29.00)
>DroSec_CAF1 45816 99 - 1
UUGCC--GCCUU-UCGGCUUGGCAAAAUAAAACGCCAGACUCGUAAUUGAAUAUCAAUUCAGGCCAACGCCGAAAUGCUGAGGGGCAGGGCAA-CCGGCCUGG
..(((--(((((-((((((((((..........)))))..(((.(((((.....)))))).(((....)))))...)))))))))).((....-))))).... ( -38.20)
>DroSim_CAF1 30946 99 - 1
UUGCC--GCCUU-UCGGCUUGGCAAAAUAAAACGCCAGACUCGUAAUUGAAUAUCAAUUCAGGCCAACGCCGAAAUGCUGAGGGGCAGGGCAA-CCGGCCUGG
..(((--(((((-((((((((((..........)))))..(((.(((((.....)))))).(((....)))))...)))))))))).((....-))))).... ( -38.20)
>DroEre_CAF1 39549 91 - 1
--GCACUGCCCCGCCGGCUUAGCAAAAUAAAACAGCAGACUCGUAAUUGAAUAUCCAUUCAGGCCAACACCAAAAGGCUGAGGGGCAGGGCCA----------
--((.(((((((..((((((.((...........))......((..((((((....))))))....))......)))))).))))))).))..---------- ( -29.10)
>DroYak_CAF1 35776 102 - 1
CCGCCCUGUCCC-UCGGCUUAGCAAAAUAAAAAGCCAGACUAGUAAUUGAAUAUCAAUUCAGGCCAACGCCAAAAUGUUUAGGGGCUGGGCAAACCAACUCAG
..((((.(((((-(.(((((...........)))))((((..(.(((((.....)))))).(((....))).....)))))))))).))))............ ( -32.20)
>consensus
UUGCC__GCCUU_UCGGCUUGGCAAAAUAAAACGCCAGACUCGUAAUUGAAUAUCAAUUCAGGCCAACGCCGAAAUGCUGAGGGGCAGGGCAA_CCAGCCUGG
..(((..(((((.(((((.............................(((((....)))))(((....))).....))))))))))..)))............ (-19.24 = -19.32 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:34 2006