Locus 5083

Sequence ID 2L_DroMel_CAF1
Location 14,513,082 – 14,513,192
Length 110
Max. P 0.952634
window8092

overview

Window 2

Location 14,513,082 – 14,513,192
Length 110
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 94.47
Mean single sequence MFE -33.06
Consensus MFE -29.82
Energy contribution -30.06
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.90
SVM decision value 1.42
SVM RNA-class probability 0.952634
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14513082 110 + 22407834
-CAUGUAUUUCUCUCUGUGUAUUAGUGAUGAGACGCAAACCUGUCGCUCGUGCUGACGACAAAUGUCUUCAGCGGAAGUGACACAACAAAAAUCCCUGGCAACCGAAAGGG
-..((..((((((.(((.....))).)).))))..))....(((((((..((((((.(((....))).))))))..)))))))..........((((..(....)..)))) ( -35.20)
>DroSec_CAF1 44611 110 + 1
-UAUCUAUUUCUCUCUGUGUAUUAGUGAUGAGACGCGAACCUGUCGCUCGUGCUGACGACAAAUGUCUUCAGCGGAAGUGACACAACAAAAAUCCCUGGCAACCGAAAGGG
-..............(((((.(((....))).)))))....(((((((..((((((.(((....))).))))))..)))))))..........((((..(....)..)))) ( -32.80)
>DroSim_CAF1 29770 110 + 1
-UAUCUAUUUCUCUCUGUGUAUUAGUGAUGAGUCGCGAACCUGUCGCUCGUGCUGACGACAAAUGUCUUCAGCGGAAGUGACACAACAAAAAUCCCUGGCAACCGAAAGGG
-................(((....((((....)))).....(((((((..((((((.(((....))).))))))..)))))))...............))).((....)). ( -31.30)
>DroEre_CAF1 38375 110 + 1
-CAUCUGUUUCUCCCUGUGCAUUAGUGAUGAGACUCGAACCUGUCGCUCGUGCGGACGACAAAUGUCUUCAGCGGAAGUGACACAACGAAAAUCCCGGGCAACCGAAAGGG
-..((.(((((((.(((.....))).)).)))))..)).(((((((((..(((.((.(((....))).)).)))..)))))).............(((....)))..))). ( -33.30)
>DroYak_CAF1 34511 111 + 1
ACAUCUAUUUCUCUCUGUGCAUCAGUGAUGAGACUCGAACCUGUCGCUCGUGCUGACGACAAAUGUCUUCAGCGGAAGUGACACAACAAAAAUCCCAGGCAACCGAAAGGG
.......((((((.(((.....))).)).))))........(((((((..((((((.(((....))).))))))..)))))))...................((....)). ( -32.70)
>consensus
_CAUCUAUUUCUCUCUGUGUAUUAGUGAUGAGACGCGAACCUGUCGCUCGUGCUGACGACAAAUGUCUUCAGCGGAAGUGACACAACAAAAAUCCCUGGCAACCGAAAGGG
.......((((((.(((.....))).)).))))........(((((((..((((((.(((....))).))))))..)))))))...................((....)). (-29.82 = -30.06 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:33 2006