Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,509,968 – 14,510,072 |
Length | 104 |
Max. P | 0.548904 |
Location | 14,509,968 – 14,510,072 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 94.29 |
Mean single sequence MFE | -21.04 |
Consensus MFE | -15.70 |
Energy contribution | -15.42 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -1.97 |
Structure conservation index | 0.75 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14509968 104 - 22407834 GACAG----CCAACUAGUCUUGGCUGGUACUAUCAGCAAAGAGCUCGAAAAAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU ..(((----((((......)))))))(((...(((((.....))).))....))).((((((((((......)))))).))))......................... ( -20.40) >DroSec_CAF1 41546 108 - 1 GACAGCCAGCCAACUAGUCUUUGCUGGCACUAUCAGCCAAGAGCUCGAAAAAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU ....((((((.((......)).))))))....(((((.....))).))........((((((((((......)))))).))))......................... ( -19.70) >DroSim_CAF1 26670 108 - 1 GACAGCCAGCCAACUAGUCUUUGCUGGCACUAUCAGCCAAGAGCUCGAAAAAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU ....((((((.((......)).))))))....(((((.....))).))........((((((((((......)))))).))))......................... ( -19.70) >DroEre_CAF1 35041 103 - 1 GACAG----CCAGCUAGUCUUGGCUGCCACUAUCAGCCAAGAGCUCGAA-AAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU ....(----(.(((...(((((((((.......))))))))))))....-......((((((((((......)))))).))))))....................... ( -23.10) >DroYak_CAF1 31185 104 - 1 GACAG----CCAACUAGCCUUGGCUGGCACUAUCAGCGAAGAGCUCGAAAAAUACAUUCGGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU ..(((----((((......)))))))((....(((((.....))).))........((((((((((......)))))).))))))....................... ( -22.30) >consensus GACAG____CCAACUAGUCUUGGCUGGCACUAUCAGCCAAGAGCUCGAAAAAUACAUUCAGUAAAUGUAUCAAUUUACAUGAAGCAACACUUAAUUUGAAAAUUAUAU ..........((((.((((((.(((((.....))))).))).))).).........((((((((((......)))))).))))............))).......... (-15.70 = -15.42 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:29 2006