Locus 5078

Sequence ID 2L_DroMel_CAF1
Location 14,507,872 – 14,507,973
Length 101
Max. P 0.937760
window8083

overview

Window 3

Location 14,507,872 – 14,507,973
Length 101
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 94.41
Mean single sequence MFE -41.30
Consensus MFE -33.33
Energy contribution -33.73
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.81
SVM decision value 1.26
SVM RNA-class probability 0.937760
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14507872 101 - 22407834
UUCCUGGCAGCUGGUGGUCCAAAGUCCGAGUUCGAGGUCCGG-------ACUCAAGUUUACACUCACUUACCGACGAGUGGGGCGGCGUACGACCUCCUGCCAGCUUU
...(((((((..(((.((.(...(((((((((((.....)))-------)))).......(((((..........)))))))))...).)).)))..))))))).... ( -42.00)
>DroSec_CAF1 39516 101 - 1
UUCCUGGCAGCUGGUGGUCCAAAGUCCGAGUUCGAGGUCCGG-------ACUCAAGUUUACACUCACUUACCGACGAGUGGGGCGGCGUACGACCUCCUGCCAGCUUU
...(((((((..(((.((.(...(((((((((((.....)))-------)))).......(((((..........)))))))))...).)).)))..))))))).... ( -42.00)
>DroSim_CAF1 24221 101 - 1
UUCCUGGCAGCUGGUGGUCCAAAGUCCGAGUUCGAGGUCCGG-------ACUCAAGUUUACACUCACUUACCGACGAGUGGGGCGGCGUACGACCUCCUGCCAGCUUU
...(((((((..(((.((.(...(((((((((((.....)))-------)))).......(((((..........)))))))))...).)).)))..))))))).... ( -42.00)
>DroEre_CAF1 33009 101 - 1
UUCCCGGCAGCUGGUGGUCCGAAGUCCGAGUUCGAGGCCCGG-------UCUCAAGCUUACACUCACUUACUGACGAGUGGGGCGGCAUACGACCUCCUGCCAGCUUU
.....(((((..(((.((..(..(((((((((.(((((...)-------)))).))))).(((((..........)))))))))..)..)).)))..)))))...... ( -38.40)
>DroYak_CAF1 28841 108 - 1
UUCCUGGCAGCUGGUGGUCCAAAGUCCGAGUUCGAGGUCCGGAGUCCGAACUCAAGUUUACACUCACUUACUGACGAGUGGGGCGGCGUACGACCUCCUGCCAGCUUU
...(((((((..(((.((.(...(((((((((((.((.......))))))))).......(((((..........)))))))))...).)).)))..))))))).... ( -42.10)
>consensus
UUCCUGGCAGCUGGUGGUCCAAAGUCCGAGUUCGAGGUCCGG_______ACUCAAGUUUACACUCACUUACCGACGAGUGGGGCGGCGUACGACCUCCUGCCAGCUUU
...(((((((..(((.((.....(((((((((((.....))).......)))).......(((((..........))))))))).....)).)))..))))))).... (-33.33 = -33.73 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:24 2006