Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,507,721 – 14,507,837 |
Length | 116 |
Max. P | 0.558824 |
Location | 14,507,721 – 14,507,837 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 90.52 |
Mean single sequence MFE | -20.75 |
Consensus MFE | -16.83 |
Energy contribution | -16.33 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.08 |
Mean z-score | -1.46 |
Structure conservation index | 0.81 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558824 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14507721 116 + 22407834 ACUCUCCCACUGCUUAGACAUUAAACACCAAAUAUGUUUUAAAUUUACAUAGAAAUCAAUUCCAAUCUGGGAACUUGAGCUAUCAAUCAUUCAGUCGGCUGAAGAAAGUCCUCAAC ................(((.............................((((...((((((((......)))).)))).))))...((.(((((....)))))))..)))...... ( -16.80) >DroSec_CAF1 39365 116 + 1 ACUUUCAACCUACUUAGACAUUAAACACCAAAUAUGUUUUAAAUUUGAAUGGAAAUCAAUUCCAAUCUGGGAACUUGAGCCAUCAAUCAUGCAGUCGGCUGAAGAAAGUCCUCAAC ((((((.........((((((............)))))).....((((.(((...((((((((......)))).)))).)))))))(((.((.....))))).))))))....... ( -21.30) >DroSim_CAF1 24070 116 + 1 ACUAUCCCCCUACUUAGACAUUAAACACCAAAUAUGUUUUAAAUUUGAAUGGAAAUCAAUUCCAAUCUGGGAACUUGAGCCAUCAAUCAUGCAGUCGGCUGAAGAAAGUCCUCAAC ....((((.......((((((............)))))).......((.(((((.....))))).)).)))).(((.((((..(.........)..)))).)))............ ( -21.20) >DroEre_CAF1 32859 115 + 1 ACUCUCC-CCUGUGUAGACUUUAAAUACCACAUAAAUUUGAAAUUUAAAUGGAAAUCAAUUCCAAUUUCGGAACUUGAGCCAUCAAUCAUGCAGUCGGCUGAAGAAAGUCCUCAAC .......-....((..((((((..............((((((((.....(((((.....))))))))))))).(((.((((..(.........)..)))).)))))))))..)).. ( -23.70) >consensus ACUCUCCCCCUACUUAGACAUUAAACACCAAAUAUGUUUUAAAUUUAAAUGGAAAUCAAUUCCAAUCUGGGAACUUGAGCCAUCAAUCAUGCAGUCGGCUGAAGAAAGUCCUCAAC ................(((...(((((.......))))).........((((...((((((((......)))).)))).))))..........)))((((......))))...... (-16.83 = -16.33 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:23 2006