Locus 5076

Sequence ID 2L_DroMel_CAF1
Location 14,506,812 – 14,506,914
Length 102
Max. P 0.534720
window8081

overview

Window 1

Location 14,506,812 – 14,506,914
Length 102
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 86.31
Mean single sequence MFE -32.83
Consensus MFE -24.85
Energy contribution -26.38
Covariance contribution 1.53
Combinations/Pair 1.04
Mean z-score -2.23
Structure conservation index 0.76
SVM decision value 0.00
SVM RNA-class probability 0.534720
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14506812 102 + 22407834
-----AGAACCCGCACAAAGUGGGAACCCAAGCGCCCGGCAAA------GGCAAAAAGCCGGGAAGAUAAAUGAAGGCGCAGCUGCUGCGGCUACAUCAACGCUAAUUGCUCU
-----....(((((.....)))))......((((((((((...------........)))))).......(((.((.(((((...))))).)).)))...))))......... ( -35.10)
>DroPse_CAF1 36321 103 + 1
UCACAGGCACCAGAAAGAACAGAGAAACAGAGCACC----AGA------GCACCAGAGUCAAGAAGAUAAAUGGAGACGCAGCUGCUGCGGCUACAUCAACGCUAAUUGCUCU
............................((((((..----..(------((.(((..(((.....)))...)))((.(((((...))))).))........)))...)))))) ( -22.50)
>DroSec_CAF1 38492 102 + 1
-----AGAACCCGCACAAAGUGGGAACCCAAGCCCCCGGCAAA------GGCAAAAAGCCGGGAAGAUAAAUGAAGGCGCAGCUGCUGCGGCUACAUCAACGCUAAUUGCUCU
-----....(((((.....)))))......(((.((((((...------........)))))).......(((.((.(((((...))))).)).)))....)))......... ( -33.00)
>DroSim_CAF1 23197 102 + 1
-----AGAACCCGCACAAAGUGGGAACCCAAGCCCCCGGCAAA------GGCAAAAAGCCGGGAAGAUAAAUGAAGGCGCAGCUGCUGCGGCUACAUCAACGCUAAUUGCUCU
-----....(((((.....)))))......(((.((((((...------........)))))).......(((.((.(((((...))))).)).)))....)))......... ( -33.00)
>DroEre_CAF1 31980 108 + 1
-----AGAACCCGCACAAAGUGGGAACCCGGGCCCCCGGCAAAGGCAAAGGCAAAAAGCCGGGAAGAUAAAUGAAGGCGCAGCUGCUGCGGCUACAUCAACGCUAAUUGCUCU
-----....(((((.....))))).....((((.((((((....((....)).....)))))).((....(((.((.(((((...))))).)).))).....))....)))). ( -37.90)
>DroYak_CAF1 27755 102 + 1
-----AGAACCCGCACAAAGUGGGCACCCAAGCCCGCGGCAAA------GGCAAAAAGCCGGGAAGAUAAAUGAAGGCGCAGCUGCUGCGGCUACAUCAACGCUAAUUGCUCU
-----....(((((.....((((((......)))))).))...------(((.....)))))).......(((.((.(((((...))))).)).)))....((.....))... ( -35.50)
>consensus
_____AGAACCCGCACAAAGUGGGAACCCAAGCCCCCGGCAAA______GGCAAAAAGCCGGGAAGAUAAAUGAAGGCGCAGCUGCUGCGGCUACAUCAACGCUAAUUGCUCU
.........(((((.....)))))......(((.((((((.................)))))).......(((.((.(((((...))))).)).)))....)))......... (-24.85 = -26.38 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:22 2006