Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,505,457 – 14,505,573 |
Length | 116 |
Max. P | 0.965219 |
Location | 14,505,457 – 14,505,573 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 91.47 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -27.04 |
Energy contribution | -28.88 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.03 |
Mean z-score | -2.04 |
Structure conservation index | 0.82 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14505457 116 - 22407834 CGUACCCAGUCGGCUUGCCCCGGUCUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCCGUGCCACCAGGCCGACGUGCAGAUU .((((...(((((((((....((.......(((((((.....)))))))...((((.(((...(((((........)))))......)))))))))..)))))))))))))..... ( -36.10) >DroSec_CAF1 37131 116 - 1 CGUACCCAGUCGGCUUGCCCCGGCCUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCCGUGCCACCAGGCCGACGUGCAGAUU .((((...(((((((((....(((......(((((((.....)))))))....(((.(((...(((((........)))))......)))))))))..)))))))))))))..... ( -37.00) >DroSim_CAF1 21837 116 - 1 CGUACCCAGUCGGCUUGCCCCGGCCUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCCGUGCCACCAGGCCGACGUGCAGAUU .((((...(((((((((....(((......(((((((.....)))))))....(((.(((...(((((........)))))......)))))))))..)))))))))))))..... ( -37.00) >DroEre_CAF1 30720 116 - 1 CGUACGCAGUCGGAUUGCUCCGCUCUCAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUAAUACGGUGUAAAUCAAUUGCGUGCCACCAGGCCGACGUGCAGAUU .(((((((((.((.((((.(((.((((...(((((((.....)))))))......))))...((....))....))).)))).)).)))))(.(((....))))...))))..... ( -31.80) >DroYak_CAF1 26383 102 - 1 CGUUCGCAGU--------------CUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCUGUGCCAGCAGGCCGACGUGCAGAUU .....(((.(--------------(((...(((((((.....)))))))......))))....)))((((....(((((.....)....((((....))))))))..))))..... ( -23.60) >consensus CGUACCCAGUCGGCUUGCCCCGGCCUUAUAAACAGACAUUUAGUCUGUUAAACACGAGAAAAAUGCGCAUUAUACGGUGUAAAUCAAUUCCGUGCCACCAGGCCGACGUGCAGAUU .((((...(((((((((.............(((((((.....)))))))...((((.(((...(((((........)))))......)))))))....)))))))))))))..... (-27.04 = -28.88 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:18 2006