Locus 5072

Sequence ID 2L_DroMel_CAF1
Location 14,503,141 – 14,503,235
Length 94
Max. P 0.983904
window8073

overview

Window 3

Location 14,503,141 – 14,503,235
Length 94
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 91.39
Mean single sequence MFE -28.68
Consensus MFE -24.51
Energy contribution -24.61
Covariance contribution 0.10
Combinations/Pair 1.00
Mean z-score -1.97
Structure conservation index 0.85
SVM decision value 1.96
SVM RNA-class probability 0.983904
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14503141 94 - 22407834
UGACGGCGGCGGCACUUUUUGAUUUCGCUUCGCCGCUG------UCGCUGCUGCUGACCAAAGCGCAAAAUCACUUUUGACGUUUUUAUUCUUUGUGUCG
.((((((((((((.............))..))))))))------))((....)).(((((((((((((((....))))).))........))))).))). ( -29.92)
>DroSec_CAF1 34833 94 - 1
UGACGGCGGCGGCACUUUUUGAUUUCGCUUCGCCGCUG------UCGCUGCUGCUGACCAAAGCGCAAAAUCACUUUUGACGUUUUUAUUCUUUGUGUCG
.((((((((((((.............))..))))))))------))((....)).(((((((((((((((....))))).))........))))).))). ( -29.92)
>DroSim_CAF1 19198 94 - 1
UGACGGCGGCGGCACUUUUUGAUUUCGCUUCGCCGCUG------UCGCUGCUGCUGACCAAAGCGCAAAAUCACUUUUGACGUUUUUAUUCUUUGUGUCG
.((((((((((((.............))..))))))))------))((....)).(((((((((((((((....))))).))........))))).))). ( -29.92)
>DroEre_CAF1 28579 80 - 1
UGACGGCGGCGGCACUUUUUGAUUUC--------------------GCUGCUGCUGACCAAAGCGCAAAAUCACUUUUGACGUUUUUAUUCUUUGUGUCG
.((((((((((((.............--------------------)))))))))....(((((((((((....))))).))))))..........))). ( -24.22)
>DroYak_CAF1 24073 100 - 1
UGACGGCGGCGGCACUUUUUGAUUUCGCUUUGCCGCUGUGGAUGUCGCUGCUGCUGACCAAAGCGCAAAAUCACUUUUGACGUUUUUAUUCUUUGUGUCG
.(((((((((((((.....(((((((((.........))))).)))).)))))))).))(((((((((((....))))).))))))..........))). ( -29.40)
>consensus
UGACGGCGGCGGCACUUUUUGAUUUCGCUUCGCCGCUG______UCGCUGCUGCUGACCAAAGCGCAAAAUCACUUUUGACGUUUUUAUUCUUUGUGUCG
.(((((((((((((............((......))............)))))))).))(((((((((((....))))).))))))..........))). (-24.51 = -24.61 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:15 2006