Locus 5070

Sequence ID 2L_DroMel_CAF1
Location 14,502,326 – 14,502,442
Length 116
Max. P 0.848687
window8068

overview

Window 8

Location 14,502,326 – 14,502,442
Length 116
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.78
Mean single sequence MFE -36.95
Consensus MFE -21.35
Energy contribution -23.88
Covariance contribution 2.53
Combinations/Pair 1.19
Mean z-score -1.94
Structure conservation index 0.58
SVM decision value 0.78
SVM RNA-class probability 0.848687
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14502326 116 + 22407834
ACCCAACCCAAAUCGGCGGUCAGUCACAGCUGUCGGGCUUUAAUGCCGCCCACCAUU-UGGCCAACAAGGCUG-GAUCUGUCCGCUACUUUGGCAGUGGCACU--CUUCUCGUGGCCAUU
.......(((((..(((((.(((((.(((((....((((..((((........))))-.)))).....)))))-)).))).)))))..))))).((((((((.--......)).)))))) ( -42.00)
>DroSec_CAF1 33975 117 + 1
ACCCAACCCAAAUCGGCGGUCAGUCACAGCUGUCGGGCAUUAAUGCCGCCCACCAUU-UGGCCAACCAGGCUGGGAUCUGUCCGCCACUUUGGCAGUGGCACU--CUUCUCUUGGCCAUU
.......(((((..(((((.(((((.(((((...((((.........))))......-(((....)))))))).)).))).)))))..))))).((((((.(.--........))))))) ( -43.30)
>DroSim_CAF1 18374 117 + 1
ACCCAACCCAAAUCGGCGGUCAGUCACAGCUGUCGGGCAUUAAUGCCGCCCACCAUU-UGGCCAACCAGGCUGGGAUCUGUCCGCCACUUUGGCAGUGGCACU--CUUCUCUUGGCCAUU
.......(((((..(((((.(((((.(((((...((((.........))))......-(((....)))))))).)).))).)))))..))))).((((((.(.--........))))))) ( -43.30)
>DroEre_CAF1 27755 97 + 1
ACCCAACCCAAAUCGGCGGUCAGUCACAGCUGUCGGGCUUAAAUGCCGCCCACGAUU-GGGCCAAGCAGGCUG-GAGCUGUCC-------------------U--CUUCUCUUGGCCAUU
..............(((((.((((..(((((((..(((......)))(((((....)-))))...))).))))-..)))).))-------------------.--...(....))))... ( -34.70)
>DroYak_CAF1 23179 116 + 1
GCCCAGCCCAAAUCGGCGGUCAGUCACAGCUGUCGGACAUUAAAGCCGCCCACCAUU-GAGCCAAGCAAGCUG-GAUCUGUCCGCCACUUUGGCAGUGGCACU--CUUCUCUUGGCCAUU
.....(((.(((..(((((.(((((.(((((((.((.(......)))((.((....)-).))...)).)))))-)).))).)))))..))))))((((((.(.--........))))))) ( -37.60)
>DroPer_CAF1 22559 94 + 1
------------------------AAAAGCUGUCAGACAUUUAAGCCGCCCACCAUUUUGGCCGACCA-UCUG-UAUCUGUCCAUCGGCCUGACAGUGGCACUCACUUCUCUUGGCCAUU
------------------------....((((((((........((((((.........))).(((..-....-.....)))....)))))))))))(((.(...........))))... ( -20.80)
>consensus
ACCCAACCCAAAUCGGCGGUCAGUCACAGCUGUCGGGCAUUAAUGCCGCCCACCAUU_UGGCCAACCAGGCUG_GAUCUGUCCGCCACUUUGGCAGUGGCACU__CUUCUCUUGGCCAUU
..............(((((.(((((.(((((....(((......)))(((.........)))......))))).)).))).))((((((.....))))))..............)))... (-21.35 = -23.88 +   2.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:10 2006