Locus 507

Sequence ID 2L_DroMel_CAF1
Location 1,520,175 – 1,520,279
Length 104
Max. P 0.998061
window810

overview

Window 0

Location 1,520,175 – 1,520,279
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 96.35
Mean single sequence MFE -34.12
Consensus MFE -30.92
Energy contribution -30.92
Covariance contribution -0.00
Combinations/Pair 1.12
Mean z-score -2.20
Structure conservation index 0.91
SVM decision value 3.00
SVM RNA-class probability 0.998061
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1520175 104 + 22407834
GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCAACGCAAUGUCAGACGAAAGGCAAUGAUAU
.....(((((((((((((((((.......)))))).)))))..((((((...........))))))........))))))((((((..(....)....)))))) ( -34.90)
>DroSec_CAF1 2545 104 + 1
GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCAACGCAAUGACAGACGAAAGGCAAUGAUAU
.....((((((..(((((((((.......))))))..(((((.((((((...........))))))..)))))...)))...)))...(....))))....... ( -31.20)
>DroSim_CAF1 2533 104 + 1
GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCAACACAAUGACAGACGAAAGGCAAUGAUAU
.....(((((((((((((((((.......)))))).)))))..((((((...........))))))........))))))....((..(....)....)).... ( -31.20)
>DroEre_CAF1 2460 104 + 1
GAUACUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCACCGCAACGCCAGGCGAACUGCAAUGAUAU
.......(((((((((((((((.......))))))........((((((((((((...........)))).))))))))..))))))))).............. ( -37.20)
>DroYak_CAF1 2547 104 + 1
GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCACCGCAAUGCCAGACGAAAGGCAAUGAUAU
............((((((((((.......)))))).))))(((((((((((((((...........)))).))))))))..((((........))))..))).. ( -36.10)
>consensus
GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCAACGCAAUGACAGACGAAAGGCAAUGAUAU
.......(((((((((((((((.......))))))..(((((.((((((...........))))))..)))))........))))))))).............. (-30.92 = -30.92 +  -0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:50 2006