Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,520,175 – 1,520,279 |
Length | 104 |
Max. P | 0.998061 |
Location | 1,520,175 – 1,520,279 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 96.35 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -30.92 |
Energy contribution | -30.92 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -2.20 |
Structure conservation index | 0.91 |
SVM decision value | 3.00 |
SVM RNA-class probability | 0.998061 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1520175 104 + 22407834 GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCAACGCAAUGUCAGACGAAAGGCAAUGAUAU .....(((((((((((((((((.......)))))).)))))..((((((...........))))))........))))))((((((..(....)....)))))) ( -34.90) >DroSec_CAF1 2545 104 + 1 GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCAACGCAAUGACAGACGAAAGGCAAUGAUAU .....((((((..(((((((((.......))))))..(((((.((((((...........))))))..)))))...)))...)))...(....))))....... ( -31.20) >DroSim_CAF1 2533 104 + 1 GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCAACACAAUGACAGACGAAAGGCAAUGAUAU .....(((((((((((((((((.......)))))).)))))..((((((...........))))))........))))))....((..(....)....)).... ( -31.20) >DroEre_CAF1 2460 104 + 1 GAUACUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCACCGCAACGCCAGGCGAACUGCAAUGAUAU .......(((((((((((((((.......))))))........((((((((((((...........)))).))))))))..))))))))).............. ( -37.20) >DroYak_CAF1 2547 104 + 1 GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCACCGCAAUGCCAGACGAAAGGCAAUGAUAU ............((((((((((.......)))))).))))(((((((((((((((...........)))).))))))))..((((........))))..))).. ( -36.10) >consensus GAUAAUGUGUUUGGCGGCAAUCAUUUUUCGGUUGCAUGCCAUCGCGGUGGCAUUGAUUAACACCGCCAAUGGUCAACGCAAUGACAGACGAAAGGCAAUGAUAU .......(((((((((((((((.......))))))..(((((.((((((...........))))))..)))))........))))))))).............. (-30.92 = -30.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:50 2006