Locus 5069

Sequence ID 2L_DroMel_CAF1
Location 14,500,127 – 14,500,222
Length 95
Max. P 0.958835
window8067

overview

Window 7

Location 14,500,127 – 14,500,222
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 93.26
Mean single sequence MFE -21.20
Consensus MFE -19.38
Energy contribution -19.62
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.52
Structure conservation index 0.91
SVM decision value 1.49
SVM RNA-class probability 0.958835
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14500127 95 - 22407834
UGUAGAGAGGGCCAGCUAAUUACAGGUUGCCACAAAGGCUCCCAAAAACAUAUGCUAAAUAGUUGCGCCGCUCAGAAUGAAUAAAAUACGUUUUA
......((((((((((((.(((((((..(((.....)))..)).........)).))).)))))).))).)))((((((.........)))))). ( -23.00)
>DroSec_CAF1 31832 95 - 1
UGUAGAGAGGGCCAGCUAAUUACAGGUUGCCACAAAGGCUCCCAAAAACAUAUGCUAAAUAGUUGCGCCGCUCAGAAUAAAUAAAAUACAUUUUA
......((((((((((((.(((((((..(((.....)))..)).........)).))).)))))).))).)))...................... ( -22.20)
>DroSim_CAF1 16250 95 - 1
UGUGGAGAGGGCCAGCUAAUUACAGGUUGCCACAAAGGCUCCCAAAAACAUAUGCUAAAUAGUUGCGCCGCUCAGAAUAAAUAAAAUACAUUUUA
......((((((((((((.(((((((..(((.....)))..)).........)).))).)))))).))).)))...................... ( -22.20)
>DroEre_CAF1 25806 95 - 1
UGUAUGAAGGGCCAGCUAAUUACAGGUGGCCACAAAGGCUCCCAAAAACAUAUGCUAAAUAGUUGUGCCGCUCAGAAUAAAUGAAAUACAUUUGU
....(((..(((((((((.(((((((..(((.....)))..)).........)).))).)))))).)))..)))..(((((((.....))))))) ( -24.20)
>DroYak_CAF1 21140 95 - 1
CGUAGGAAGGGCCAGUUAAUUACAGGUUGCCACAAUGGCUCCCAAAAACAUAUGCUAAAUAGUUGCGCCGCUCAGAAUAAAUAAAAUACAUGUUA
.....((..(((............((..(((.....)))..))..........((.........)))))..))...................... ( -14.40)
>consensus
UGUAGAGAGGGCCAGCUAAUUACAGGUUGCCACAAAGGCUCCCAAAAACAUAUGCUAAAUAGUUGCGCCGCUCAGAAUAAAUAAAAUACAUUUUA
......((((((((((((.(((((((..(((.....)))..)).........)).))).)))))).))).)))...................... (-19.38 = -19.62 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:09 2006