Locus 5063

Sequence ID 2L_DroMel_CAF1
Location 14,491,768 – 14,491,885
Length 117
Max. P 0.679876
window8051

overview

Window 1

Location 14,491,768 – 14,491,885
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.54
Mean single sequence MFE -39.23
Consensus MFE -26.94
Energy contribution -27.50
Covariance contribution 0.56
Combinations/Pair 1.19
Mean z-score -1.67
Structure conservation index 0.69
SVM decision value 0.30
SVM RNA-class probability 0.679876
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14491768 117 + 22407834
GUCGAACUCGUCGAGUUCCUCGGGCAGUGCUGAGAUCUCGGCAGCCAAGUCACCCUCCGGCCAGGCCAAAUCGCCCAAGUCGAGCACUCCAAUCAGCUCGACGGCAACCAGCG---CAAG
(((((((((...))))))...((((..((((((....))))))(((..(((.......)))..)))......))))..(((((((..........))))))))))........---.... ( -42.90)
>DroPse_CAF1 7157 120 + 1
CUCCACAUCCUCGACCUCGUCGAGCAACGGCGAUAUAUCGGCGGCCAAGUCGCCCGGCAGCCAGGCAAAAUCGCCGAAAUCCACAACGCCCAUUACGGCCACGGCCACUAGCAAUACCAG
..........(((((...)))))((..(((((((.....((((((...))))))..((......))...)))))))....................(((....)))....))........ ( -34.80)
>DroSim_CAF1 7522 117 + 1
GUCGAACUCGUCGAGUUCCUCGAGCAGUGCUGAGAUCUCGGCAGCCAAAUCGCCCUCCGGCCAGGCCAAAUCGCCCAAGUCGAGCACUCCAAUCAGCUCGACGGCAACCAGCG---CAAG
(..((((((...))))))..).....((((((......(((..((......))...)))(((.(((......)))...(((((((..........))))))))))...)))))---)... ( -40.80)
>DroEre_CAF1 17507 117 + 1
AUCGAACUCAUCGAGUUCCUCGAGCAGCGCCGAGAUCUCGGCAGCCAAGUCGCCCUCCGGCCAGGCCAAAUCGCCCAAGUCGAGCACACCCAUCAGCUCGACGGCAACCAGCA---CAAG
...((((((...))))))........(((((((....))))).(((.....(((....)))..(((......)))...(((((((..........)))))))))).....)).---.... ( -40.80)
>DroYak_CAF1 12625 117 + 1
GUCGAACUCAUCGAGUUCCUCGAGCAGUGCUGAGAUCUCGGCAGCCAAGUCGCCCUCCGGCCAGGCCAAAUCGCCCAAGUCGAGCACUCCAAUCAGCUCGACGGCAACCAGCA---CAAG
(..((((((...))))))..).....((((((.(((...(((.(((.((.....))..)))...)))..)))(((...(((((((..........))))))))))...)))))---)... ( -41.30)
>DroPer_CAF1 7078 120 + 1
CUCCACAUCCUCGACCUCGUCGAGCAACGGCGAUAUAUCGGCGGCCAAGUCGCCCGGCAGCCAGGCAAAAUCGCCGAAAUCCACAACGCCCAUUACGGCCACGGCCACCAGCAAUACCAG
..........(((((...)))))((..(((((((.....((((((...))))))..((......))...)))))))....................(((....)))....))........ ( -34.80)
>consensus
GUCGAACUCAUCGAGUUCCUCGAGCAGCGCCGAGAUCUCGGCAGCCAAGUCGCCCUCCGGCCAGGCCAAAUCGCCCAAGUCGAGCACUCCAAUCAGCUCGACGGCAACCAGCA___CAAG
..........(((((...)))))((..((((((....))))))(((.................(((......)))...(((((((..........)))))))))).....))........ (-26.94 = -27.50 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:55 2006