| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 14,491,609 – 14,491,728 |
| Length | 119 |
| Max. P | 0.532799 |
| Location | 14,491,609 – 14,491,728 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.57 |
| Mean single sequence MFE | -35.22 |
| Consensus MFE | -29.75 |
| Energy contribution | -29.45 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.84 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14491609 119 + 22407834 -CUCCACAUUUUCAUUUUAUUCAUAACAGAUGGACGCCAAAAAGAGUCCCUUGGCUCUGCUCGCACAGACUUGCUCCCAAAUUGGAGCGGAUUCGUCGGCAGUGAAACCCCUGCUGGCAA -.(((.....(((((((..........))))))).((.....((((((....))))))....))........(((((......))))))))...((((((((........)))))))).. ( -34.10) >DroPse_CAF1 6997 120 + 1 CCUUCUUCCUUUCCUUCCAUUCCUUAUAGAUGGAUGCCAAAAAGAGUCCCCUGGCUCUGCUCGCCCAGACAUGCUCACAGAUUGGAGCCGAUUCAUCGGCGGUAAAGCCCCUGCUGGCAA ...............((((((.......))))))(((((....(((((....((((((..((....((.....))....))..)))))))))))...(((......))).....))))). ( -31.50) >DroSim_CAF1 7363 119 + 1 -CUCCACAUUUUCAUUUCAUUCAUAACAGAUGGACGCCAAAAAGAGUCCCUUGGCUCUGCUCGCACAGACUUGCUCCCAAAUUGGAGCGGAUUCGUCGGCAGUGAAACCCCUGCUGGCAA -.(((......((..((((((.......)))))).((.....((((((....))))))....))...))...(((((......))))))))...((((((((........)))))))).. ( -34.50) >DroEre_CAF1 17348 119 + 1 -CUCUACACUUUCAUUUCAUUCAUAACAGAUGGACGCCAAAAAGAGUCCCUUGGCUCUGCUCGCACAGACUUGCUCCCAAAUUGGAGCGGAUUCGUCGGCGGUGAAACCGCUGCUGGCGA -..............((((((.......))))))(((((....((((((...((.((((......)))))).(((((......)))))))))))(.((((((.....)))))))))))). ( -39.80) >DroYak_CAF1 12466 119 + 1 -CUCUUCACUUUUAUUUCAUUCACAACAGAUGGACGCCAAAAAGAGUCCCUUGGCUCUGCUCGCACAGACUUGCUCCCAAAUUGGAGCGGACUCGUCGGCGGUGAAACCCCUGUUGGCGA -..............((((((.......))))))((((((...((((((...((.((((......)))))).(((((......)))))))))))...((.((.....))))..)))))). ( -37.00) >DroPer_CAF1 6918 120 + 1 CCUUCUUCCUUUUCUUCCAUUCCUUAUAGAUGGAUGCCAAAAAGAGUCCCCUGGCUCUGCUCGCCCAGACAUGCUCACAGAUUGGAGCCGAUUCAUCGGCGGUGAAGCCCCUGCUGGCAA ...............((((((.......))))))(((((...((((((....))))))((((((((((...((....))..)))..(((((....))))))))).)))......))))). ( -34.40) >consensus _CUCCACACUUUCAUUUCAUUCAUAACAGAUGGACGCCAAAAAGAGUCCCUUGGCUCUGCUCGCACAGACUUGCUCCCAAAUUGGAGCGGAUUCGUCGGCGGUGAAACCCCUGCUGGCAA ...............((((((.......))))))((((.....((((((.(((((.......)).)))....(((((......)))))))))))...(((((........))))))))). (-29.75 = -29.45 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:54 2006