Locus 5061

Sequence ID 2L_DroMel_CAF1
Location 14,491,213 – 14,491,325
Length 112
Max. P 0.574457
window8049

overview

Window 9

Location 14,491,213 – 14,491,325
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 87.16
Mean single sequence MFE -32.85
Consensus MFE -26.82
Energy contribution -27.10
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.82
Structure conservation index 0.82
SVM decision value 0.08
SVM RNA-class probability 0.574457
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14491213 112 + 22407834
UUACCCUCG--------AGAAAACACACUAAGCAACUGAUAUGGUUGUCUUGGAAGGAGGCGGCGGCGUUGUUACCAUCGGUAACAACCAGUACCUUCAACCGGAUUAUCUGGCCCCAUU
....(((((--------......)...((((((((((.....))))).)))))...)))).((.((((((((((((...)))))))))(((....(((....)))....))))))))... ( -34.30)
>DroPse_CAF1 6216 120 + 1
UUACACUCUUCAAUAAAAAAAACUACACUAAGCAACAAAAAUGGUUGUCUUGGAAGGAGGCGGUGGUGUCGUUACCAUCGGCAAUAACCAAUACCUACAACCGGAUUACUUGGCUCCACU
...........................(((((((((.......)))).)))))..((((.((((..(((((.......)))))...)))....((.......)).......).))))... ( -27.40)
>DroSim_CAF1 6988 112 + 1
UUACCCUCG--------AGAAAUCACACUAAGCAACUGAAAUGGUUGUCUUGGAAGGAGGCGGCGGCGUUGUUACCAUCGGUAACAACCAGUACCUUCAACCGGAUUAUCUGGCCCCAUU
....(((((--------(....))...((((((((((.....))))).)))))...)))).((.((((((((((((...)))))))))(((....(((....)))....))))))))... ( -38.50)
>DroEre_CAF1 16883 112 + 1
UUACCCUCG--------AGAAAGCACACUAAGCAACUGAAAUGGUUGUCUUGGAAGGAGGCGGCGGCGUUGUUACCAUUGGUAACAACCAGUACCUUCAACCGGAUUAUCUGGCCCCAUU
....(((((--------......)...((((((((((.....))))).)))))...)))).((.((((((((((((...)))))))))(((....(((....)))....))))))))... ( -34.50)
>DroYak_CAF1 12101 112 + 1
UUACCCUCG--------AGAAACCACACUAAGCAACUGAAAUGGUUGUCUUGGAAGGAGGCGGCGGCGUUGUUACCAUCGGUAACAACCAGUACCUUCAACCGGAUUAUCUGGCCCCAUU
....(((((--------......)...((((((((((.....))))).)))))...)))).((.((((((((((((...)))))))))(((....(((....)))....))))))))... ( -34.70)
>DroPer_CAF1 6156 119 + 1
UUACACUCUUCAAUAAC-AAAACUACACUAAGCAACAAAAAUGGUUGUCUUGGAAGGAGGCGGUGGUGUCGUUACCAUCGGCAAUAACCAAUACCUUCAACCGGAUUACUUGGCUCCACU
.................-.........(((((((((.......)))).)))))..((((.((((((((....)))))))).......((((....(((....)))....))))))))... ( -27.70)
>consensus
UUACCCUCG________AGAAACCACACUAAGCAACUGAAAUGGUUGUCUUGGAAGGAGGCGGCGGCGUUGUUACCAUCGGUAACAACCAGUACCUUCAACCGGAUUAUCUGGCCCCAUU
...........................((((((((((.....))))).)))))..(((((..((.(.(((((((((...)))))))))).)).)))))..((((.....))))....... (-26.82 = -27.10 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:53 2006