Locus 5059

Sequence ID 2L_DroMel_CAF1
Location 14,488,292 – 14,488,390
Length 98
Max. P 0.918185
window8045

overview

Window 5

Location 14,488,292 – 14,488,390
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 90.28
Mean single sequence MFE -29.73
Consensus MFE -25.88
Energy contribution -26.42
Covariance contribution 0.54
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.87
SVM decision value 1.12
SVM RNA-class probability 0.918185
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14488292 98 - 22407834
UUUUAUGGCAUUUAUUAUCACAGAAAUGUUUGUGUGAUAAAAGCGAAGCAGCGCAAAAGGCGAACGAC----------------------GACGAUGGCGGCGCAGUCAUAAAAAUGCAG
(((((((((.....((((((((.((....)).))))))))..(((..((..(((.....)))..((..----------------------..))...))..))).)))))))))...... ( -28.60)
>DroPse_CAF1 2700 120 - 1
UUUUAUGGCAUUUAUUAUCACAGAAAUGUUUGUGUGAUAAAAGCGAAGCGGCGCAAAAGGCGAACGACGAUGAACGACGACUCCAACGACGACGAUGGCGGCGCAGUCAUAAAAAUGCAG
(((((((((.....((((((((.((....)).)))))))).......(((.(((....((.(..((.((.....)).)).).))..((....))...))).))).)))))))))...... ( -32.00)
>DroSim_CAF1 4126 108 - 1
UUUUAUGGCAUUUAUUAUCACAGAAAUGUAUGUGUGAUAAAAGCGAAGCAGCGCAAAAGGCGAACGACGAUGAACGA------------AGACGAUGGCGGAGCAGUCAUAAAAAUGCAG
(((((((((.....((((((((.(......).))))))))..((...((..(((.....)))..(..((.....)).------------.)......))...)).)))))))))...... ( -25.40)
>DroEre_CAF1 13995 108 - 1
UUUUAUGGCAUUUAUUAUCACAGAAAUGUUUGUGUGAUAAAAGCGAAGCAGCGCAAAAGGCGAACGACGAUGAACGA------------CGACGAUGGCGGCGCAGUCAUAAAAAUGCAG
(((((((((.....((((((((.((....)).))))))))..(((..((..(((.....)))..((.((.....)).------------))......))..))).)))))))))...... ( -30.20)
>DroYak_CAF1 9102 108 - 1
UUUUAUGGCAUUUAUUAUCACAGAAAUGUUUGUGUGAUAAAAGCGAAGCAGCGCAAAAGGCGAACGACGAUGAACGA------------CGACGAUGGCGGCGCAGUCAUAAAAAUGCAG
(((((((((.....((((((((.((....)).))))))))..(((..((..(((.....)))..((.((.....)).------------))......))..))).)))))))))...... ( -30.20)
>DroPer_CAF1 2678 120 - 1
UUUUAUGGCAUUUAUUAUCACAGAAAUGUUUGUGUGAUAAAAGCGAAGCGGCGCAAAAGGCGAACGACGAUGAACGACGACUCCAACGACGACGAUGGCGGCGCAGUCAUAAAAAUGCAG
(((((((((.....((((((((.((....)).)))))))).......(((.(((....((.(..((.((.....)).)).).))..((....))...))).))).)))))))))...... ( -32.00)
>consensus
UUUUAUGGCAUUUAUUAUCACAGAAAUGUUUGUGUGAUAAAAGCGAAGCAGCGCAAAAGGCGAACGACGAUGAACGA____________CGACGAUGGCGGCGCAGUCAUAAAAAUGCAG
(((((((((.....((((((((.((....)).))))))))..(((..((..(((.....))).....((.....)).....................))..))).)))))))))...... (-25.88 = -26.42 +   0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:49 2006