Locus 5058

Sequence ID 2L_DroMel_CAF1
Location 14,488,144 – 14,488,236
Length 92
Max. P 0.741569
window8044

overview

Window 4

Location 14,488,144 – 14,488,236
Length 92
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 95.15
Mean single sequence MFE -26.84
Consensus MFE -23.96
Energy contribution -23.76
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.29
Structure conservation index 0.89
SVM decision value 0.45
SVM RNA-class probability 0.741569
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14488144 92 - 22407834
GCCUGCGGCAAGAGUGGGU---GGCACGCAUGCAGAGCAACUGGCGGGCGA-AAGGAGCGAAAAAUAAUGCAAUAAAUUUGACAUUAUCUCCGGCA
((((((.(((.(.(((...---..))).).)))((.....)).))))))..-..((((......(((((((((.....))).)))))))))).... ( -26.20)
>DroSec_CAF1 12731 95 - 1
GCCUGCGGCAAGAGUGGGUGGUGGCACGCAUGCAGAGCAACUGGCGGGCGA-AAGGAGCGAAAAAUAAUGCAAUAAAUUUGACAUUAUCUCCGGCA
((((((.......(((.(((....))).))).(((.....)))))))))..-..((((......(((((((((.....))).)))))))))).... ( -28.80)
>DroSim_CAF1 3975 95 - 1
GCUUGCGGCAAGAGUGGGUGGUGGCACGCAUGCAGAGCAACUGGCGGGCGA-AAGGAGCGAAAAAUAAUGCAAUAAAUUUGACAUUAUCUCCGGCA
((((((.......(((.(((....))).))).(((.....)))))))))..-..((((......(((((((((.....))).)))))))))).... ( -26.00)
>DroEre_CAF1 13849 93 - 1
GCCUGCGGCAAGAGUGGGU---GGCACGCAUGCAGAGCAACUGGCGGGCAAAAAGGAGCGAAAAAUACUGCAAUAAAUUUGACAUUAUCUCCGGCA
((((((.(((.(.(((...---..))).).)))((.....)).)))))).....((((......(((.(((((.....))).)).))))))).... ( -22.50)
>DroYak_CAF1 8934 93 - 1
GCCUGCGGCCAGAGUGGGU---GGCACGCAUGCAGAGCAACUGGCGAGCAAAAAGGAGCGAAAAAUAAUGCAAUAAAUUUGACAUUAUCUCCGGCA
((((((.(((((.(((...---..)))((.......))..)))))..)))....((((......(((((((((.....))).))))))))))))). ( -30.70)
>consensus
GCCUGCGGCAAGAGUGGGU___GGCACGCAUGCAGAGCAACUGGCGGGCGA_AAGGAGCGAAAAAUAAUGCAAUAAAUUUGACAUUAUCUCCGGCA
(((((((((..............)).))))(((...((.....))..)))....((((......(((((((((.....))).))))))))))))). (-23.96 = -23.76 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:48 2006