Locus 5057

Sequence ID 2L_DroMel_CAF1
Location 14,486,743 – 14,486,843
Length 100
Max. P 0.909172
window8043

overview

Window 3

Location 14,486,743 – 14,486,843
Length 100
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 71.30
Mean single sequence MFE -25.74
Consensus MFE -6.76
Energy contribution -7.20
Covariance contribution 0.44
Combinations/Pair 1.25
Mean z-score -2.00
Structure conservation index 0.26
SVM decision value 1.06
SVM RNA-class probability 0.909172
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14486743 100 - 22407834
GUUUCACAGCUUAUUGAUUUUGAUAGCUCAUAGCACCAUCUGCUGAAUGCAGAAUUGAAUGUACU-----UGAACCGAAGAGUUCGGACAGUUUUUCCAAAUCCA-----
...............(((((.((.((((((..(((.(((((((.....)))))..))..)))...-----))).((((.....))))...)))..)).)))))..----- ( -17.10)
>DroSec_CAF1 11370 105 - 1
GUUUCACAGGUUAUUGAUUUUGAUAGCUUAUAGCACCAUCUGCUGCAUGCAGAAUUGAAUGAACU-----UGAACCGAAGAGUUCGGACAAUUUUUCCAAAUCAAACUGC
......(((....(((((((.((..((...(((((.....)))))...))(((((((..((((((-----(........)))))))..))))))))).))))))).))). ( -25.40)
>DroSim_CAF1 2610 105 - 1
GUUUCACAGCUUAUUGAUUUUGAUAGCUUAUAGCACCAUCUGCUGGAUGCAGAAUUGAAUGAACU-----UGAACCGAAGAGUUCGGACAAUUUUUCCAAAUCAAACUGC
........((...(((((((.((..((...(((((.....)))))...))(((((((..((((((-----(........)))))))..))))))))).)))))))...)) ( -25.90)
>DroEre_CAF1 12588 93 - 1
GUUCCA--GGUU------------UCUUUG--AUUUCAACUGCUAGGUACGUAAC-GAAUGCACCUGGCUUGAAUCGGAGAAAUCGGAGCAUUUUUCCAAAUCAAACUGC
(((((.--((((------------((((((--(((.(((..(((((((.(((...-..))).)))))))))))))))))))))))))))).................... ( -34.90)
>DroYak_CAF1 7519 98 - 1
GUUCCAAAGAUU------------UACUCGUAGCACCAUCUGCUAGGUACAGAAUUAAAUGUACUUGGCAUGAAUCGGUGAGUUCGGACCAUUUUUCCAAAUUAAACUGC
............------------.....((((((((.(((((((((((((........))))))))))).))...))))((((.(((.......))).))))...)))) ( -25.40)
>consensus
GUUUCACAGCUUAUUGAUUUUGAUAGCUUAUAGCACCAUCUGCUGGAUGCAGAAUUGAAUGAACU_____UGAACCGAAGAGUUCGGACAAUUUUUCCAAAUCAAACUGC
......................................(((((.....)))))..................((((......))))(((.......)))............ ( -6.76 =  -7.20 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:47 2006