Locus 5056

Sequence ID 2L_DroMel_CAF1
Location 14,486,615 – 14,486,718
Length 103
Max. P 0.969520
window8042

overview

Window 2

Location 14,486,615 – 14,486,718
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 90.22
Mean single sequence MFE -23.26
Consensus MFE -19.58
Energy contribution -19.46
Covariance contribution -0.12
Combinations/Pair 1.10
Mean z-score -1.95
Structure conservation index 0.84
SVM decision value 1.64
SVM RNA-class probability 0.969520
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14486615 103 + 22407834
AGCGUACUCCUCCUGUUCCUCUUCUACCUUCCCCUUCAAUCCUCCGCAGAUGAGACAGUCACGCGUCAUUUAUUUGGCCGUGACAUUUCCACUCCGGGUUGCC
.(((.((((.........(((.(((......................))).)))...((((((.((((......))))))))))...........))))))). ( -22.35)
>DroSec_CAF1 11238 100 + 1
AACGUACUCCUCCUGUU---CUUUUACCUUCCCCUCGAAUCCUCCGCAGAUGAGACAGUCACGCGUCAUUUAUUUGGCCGUGACAUUUCCACUCCGGAUUGCC
.................---......................((((.((.((.((..((((((.((((......))))))))))...)))))).))))..... ( -21.30)
>DroSim_CAF1 2478 100 + 1
AUCGUACUCCUCCUGUU---CUUCUACCUUCCCCUUGAAUCCUCCGCAGAUGAGACAGUCACGCGUCAUUUAUUUGGCCGUGACAUUUCCACUCCGGAUUGCC
.................---......................((((.((.((.((..((((((.((((......))))))))))...)))))).))))..... ( -21.30)
>DroEre_CAF1 12454 100 + 1
AGCAUACUCCUACCGCU---CUGCUGCCUUCCCCUCGAAUCCUCCGCAGAUCCGACAGUCACGCGUCAUUUAUUUGGCCGUGACACUUCCACUCCGGAUGGCC
((((.............---.))))(((.(((..(((.(((.......))).)))..((((((.((((......))))))))))...........))).))). ( -26.74)
>DroYak_CAF1 7388 100 + 1
AUCGUACUCCUCCUGUU---CUUCUACCUUCCUAUCGAUUCCUUCGCAGAUGCGACAGUCACGCGUCAUUUAUUUGGCCGUGACAGUUCCACUCCGGAUUGCC
...(((.(((.......---.......................((((....))))..((((((.((((......))))))))))...........))).))). ( -24.60)
>consensus
AGCGUACUCCUCCUGUU___CUUCUACCUUCCCCUCGAAUCCUCCGCAGAUGAGACAGUCACGCGUCAUUUAUUUGGCCGUGACAUUUCCACUCCGGAUUGCC
..........................................((((.((.((.((..((((((.((((......))))))))))...)))))).))))..... (-19.58 = -19.46 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:46 2006