Locus 5054

Sequence ID 2L_DroMel_CAF1
Location 14,485,014 – 14,485,125
Length 111
Max. P 0.986404
window8039

overview

Window 9

Location 14,485,014 – 14,485,125
Length 111
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.23
Mean single sequence MFE -35.91
Consensus MFE -31.60
Energy contribution -31.73
Covariance contribution 0.13
Combinations/Pair 1.07
Mean z-score -2.71
Structure conservation index 0.88
SVM decision value 2.04
SVM RNA-class probability 0.986404
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14485014 111 - 22407834
ACAUGCAUA--------UAUAUCUCUUGUGCUUCGGAUGGAUCUUUCUGGUCGGUCUGUGACUUCACGUCUGGCCAACAUGUUGCUUCUGCAGCGUUUUGUUCUU-UUCCGCCGCCACUU
....(((((--------.........)))))..(((.((((......(((((((.(.(((....)))).)))))))..(((((((....))))))).........-.)))))))...... ( -32.60)
>DroSec_CAF1 9625 116 - 1
ACAUGCAUAUAC--AUAUAUAUCUC-UGUGCUUGGGAUGGAUCUUUCUGGUCGGACUGUGACUUCACGUCUGGCCAACAUGUUGCUUCUGCGGCGUUUUGUUCUU-UUCCGCCGCCACUU
....(((...((--((...((((((-.......))))))........(((((((((.(((....))))))))))))..)))))))....((((((..........-...))))))..... ( -35.82)
>DroSim_CAF1 869 116 - 1
ACAUGCAUAUAC--AUAUAUAUCUC-AGUGCUUGGGAUGGAUCUUUCUGGUCGGACUGUGACUUCACGUCUGGCCAACAUGUUGCUUCUGCGGCGUUUUGUUCUU-UUCCGCCGCCACUU
....(((...((--((...((((((-((...))))))))........(((((((((.(((....))))))))))))..)))))))....((((((..........-...))))))..... ( -36.22)
>DroYak_CAF1 5727 119 - 1
ACAUGCAUAUACAUAUAUAUAUCUG-UGUGCUUCGGAUGGAUCUUUCUGGUCGGGCUGUGACUUCACGUCUGGCCAACAUGUUGCUGGUGCAGCGUUUUGUUCUUUUUCCGCCGCCACUU
....(((((((.(((....))).))-)))))..(((.((((......(((((((((.(((....))))))))))))..(((((((....)))))))...........)))))))...... ( -39.00)
>consensus
ACAUGCAUAUAC__AUAUAUAUCUC_UGUGCUUCGGAUGGAUCUUUCUGGUCGGACUGUGACUUCACGUCUGGCCAACAUGUUGCUUCUGCAGCGUUUUGUUCUU_UUCCGCCGCCACUU
....(((((.................)))))...((.((((......(((((((((.(((....))))))))))))..(((((((....)))))))...........))))))....... (-31.60 = -31.73 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:43 2006