Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,482,315 – 14,482,472 |
Length | 157 |
Max. P | 0.782469 |
Location | 14,482,315 – 14,482,432 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.19 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -26.41 |
Energy contribution | -26.22 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -2.70 |
Structure conservation index | 0.83 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14482315 117 + 22407834 UUGGGUUCUUUGG---UGUUGCGUUAGUUUGCCGGAUGUUACCCCUUUUCAUACCGGCAACUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCA ((((((.....((---(((((((((((((.((((((((...........))).)))))))))))).(((((...)))))............))))))))......))))))......... ( -32.30) >DroSec_CAF1 6894 117 + 1 UUGGGUUCUUUGG---UGUUGCGUUAGUUUGCCGGAUGUUACCCCUUUUCAUACCGGCAUCUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCA ((((((.....((---(((((((((((..(((((((((...........))).)))))).))))).(((((...)))))............))))))))......))))))......... ( -31.00) >DroEre_CAF1 8350 118 + 1 UUGGGUUCUUUGG--GUGUUGCGUUAGUUGGCCGGAUGUUACCCCUUUUCAUACCGGCAUCUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCA ....(((.(((((--((((.(((((((...((((((((...........))).)))))..))))).(((((...))))).....................)).))))))))).))).... ( -32.80) >DroYak_CAF1 2812 120 + 1 UUGGGUUCUUCGGUGUUGUUGCGUUAGUUUGCCGGAUGUUACCCCUUUUCAUACCGGCAUCUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCA ...........(((((..((..(((((..(((((((((...........))).)))))).))))).........................((((((....))))))....))..))))). ( -31.40) >consensus UUGGGUUCUUUGG___UGUUGCGUUAGUUUGCCGGAUGUUACCCCUUUUCAUACCGGCAUCUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCA ((((((....(((...(((((((((((...((((((((...........))).)))))..))))).(((((...)))))............)))))).)))....))))))......... (-26.41 = -26.22 + -0.19)
Location | 14,482,352 – 14,482,472 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.19 |
Mean single sequence MFE | -25.35 |
Consensus MFE | -24.50 |
Energy contribution | -25.00 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.97 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782469 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14482352 120 + 22407834 ACCCCUUUUCAUACCGGCAACUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCAGCUAAUUAGCCCAAGACGGCAACGAAUUUGUUGAUGUUAA ...............(.((((.....)))).)..................((((((....))))))......((((((((((.((((.(((......)))....)))).)))))))))). ( -27.00) >DroSec_CAF1 6931 120 + 1 ACCCCUUUUCAUACCGGCAUCUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCAGCUAAUUAGCCCAAGACGGCAACGAAUUUGUUGAUGUUAA .............(((((........)))))...................((((((....))))))......((((((((((.((((.(((......)))....)))).)))))))))). ( -26.60) >DroEre_CAF1 8388 120 + 1 ACCCCUUUUCAUACCGGCAUCUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCAGCUAAUUAGCCCGAGACGGCAACGAAUUUGUUGAUGUUAA .............(((((........)))))...................((((((....))))))......((((((((((.((((.(((......)))....)))).)))))))))). ( -26.60) >DroYak_CAF1 2852 120 + 1 ACCCCUUUUCAUACCGGCAUCUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCAGCUAAUUAGCCCGAGACAGCAACGCAUUUGUUGAUGUUAA ...............((((((.(((((...((..................((((((....))))))(((...((....))(((....)))..)))........))..))))))))))).. ( -21.20) >consensus ACCCCUUUUCAUACCGGCAUCUGACAGUUGGCUUCUAAUAUUUCAAAAUUUGUAACAUUUGUUACACUCAAAUGACAUCAGCUAAUUAGCCCAAGACGGCAACGAAUUUGUUGAUGUUAA .............(((((........)))))...................((((((....))))))......((((((((((.((((.(((......)))....)))).)))))))))). (-24.50 = -25.00 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:40 2006