Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 14,482,165 – 14,482,280 |
Length | 115 |
Max. P | 0.543929 |
Location | 14,482,165 – 14,482,280 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.91 |
Mean single sequence MFE | -24.97 |
Consensus MFE | -22.67 |
Energy contribution | -22.93 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.91 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 14482165 115 - 22407834 UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAAGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUUCGAAU-----UGAAA .((((((((((.((((......)))).))))))...)))).......((((((....((........))...........((((..((((.......))))..)))))))-----))).. ( -24.90) >DroSec_CAF1 6745 114 - 1 UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAAGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUUCGAA------UGAAA ....(((((((.((((......)))).)))))))..((((((....(.......)..((........)).))))))....((((..((((.......))))..))))..------..... ( -23.80) >DroEre_CAF1 8198 116 - 1 UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAGGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUUCGAAU----CCAAAA ....(((((((.((((......)))).)))))))..(((((.....(((.......))).....................((((..((((.......))))..)))).))----)))... ( -25.40) >DroYak_CAF1 2652 120 - 1 UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAGGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUCCGACUGAACAUGAAA .((((((((((.((((......)))).))))))...))))...((((((........((........))................(((((......))))).....))))))........ ( -25.80) >consensus UCUCAAAUUACGGACAAAUAAAUGUUGGUAAUUUUGUGGGUAAUCAGUCAAUUUCAGGCAAACAAAAGCAUAUCCAAAACCGAACGGGGGUUAACUUCCUCUAUUCGAAU_____UGAAA ....(((((((.((((......)))).)))))))..((((((....(.......)..((........)).))))))....((((..((((.......))))..))))............. (-22.67 = -22.93 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:38 2006