Locus 505

Sequence ID 2L_DroMel_CAF1
Location 1,514,927 – 1,515,022
Length 95
Max. P 0.570852
window807

overview

Window 7

Location 1,514,927 – 1,515,022
Length 95
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 80.05
Mean single sequence MFE -21.50
Consensus MFE -14.37
Energy contribution -15.48
Covariance contribution 1.11
Combinations/Pair 1.25
Mean z-score -1.32
Structure conservation index 0.67
SVM decision value 0.07
SVM RNA-class probability 0.570852
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1514927 95 + 22407834
------------------GCACUU--UUGGAUGCCCACUUUUACGAGCCGAUAAUGUUAUUGGCGCAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGUCCGGGAUAUUUGAUAUU
------------------......--(..(((((((........(.(((((((....))))))).).(((.....(((((.........)))))...)))))).))))..).... ( -23.80)
>DroSec_CAF1 132507 95 + 1
------------------GCAUUU--UUGGAUGCCCACUUUUACGAGCCGAUAAUGUUAUUGGCGCAGGAAUUUUAUGAAUUGACCAUUUUCAUUUAGCCGGGAUAUUUGAUAUU
------------------......--(..(((((((........(.(((((((....))))))).).((......(((((.........)))))....))))).))))..).... ( -21.90)
>DroSim_CAF1 135132 95 + 1
------------------GCAUUU--UUGGAUGCCCACUUUUACGAGCCGAUAAUGUUAUUGGCGCAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGGCCGGGAUAUUUGAUAUU
------------------......--(..(((((((........(.(((((((....))))))).).((......(((((.........)))))....))))).))))..).... ( -21.90)
>DroEre_CAF1 138428 96 + 1
------------------GCAUUUU-UUAGCUGCCCACUCUUACGAGCCGAUAAUGUUAUUGGCGUAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGGCCGGGAUAUUUGAUAUU
------------------((.....-...))..(((..((((((..(((((((....)))))))))))))............(.(((........))).))))............ ( -20.70)
>DroWil_CAF1 211900 105 + 1
UUUCCCUUAGUUGUUGCCACAUAU--UUUUUUGUC--CUUUUAUGAGCCGAUAAUGUUAUUAGCCUAGGCAUUUUAUGUGUUGACCACUUUUAUCUAUCCU------CCAACCUC
........(((.(((..((((((.--.....((.(--((.....(.((..(((....)))..))).)))))...))))))..))).)))............------........ ( -15.70)
>DroYak_CAF1 135835 97 + 1
------------------GCAUUUUUUUGGGUGCCCACUCUUACGAGCCGAUAAUGUUAUUGGCGUAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGGCCGGGAUAUUCGAUAUU
------------------........((((((((((..((((((..(((((((....)))))))))))))............(.(((........))).)))).))))))).... ( -25.00)
>consensus
__________________GCAUUU__UUGGAUGCCCACUUUUACGAGCCGAUAAUGUUAUUGGCGCAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGGCCGGGAUAUUUGAUAUU
..........................((((((((((..........(((((((....)))))))...((......(((((.........)))))....))))).))))))).... (-14.37 = -15.48 +   1.11) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:47 2006