Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,514,927 – 1,515,022 |
Length | 95 |
Max. P | 0.570852 |
Location | 1,514,927 – 1,515,022 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 80.05 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -14.37 |
Energy contribution | -15.48 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.25 |
Mean z-score | -1.32 |
Structure conservation index | 0.67 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1514927 95 + 22407834 ------------------GCACUU--UUGGAUGCCCACUUUUACGAGCCGAUAAUGUUAUUGGCGCAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGUCCGGGAUAUUUGAUAUU ------------------......--(..(((((((........(.(((((((....))))))).).(((.....(((((.........)))))...)))))).))))..).... ( -23.80) >DroSec_CAF1 132507 95 + 1 ------------------GCAUUU--UUGGAUGCCCACUUUUACGAGCCGAUAAUGUUAUUGGCGCAGGAAUUUUAUGAAUUGACCAUUUUCAUUUAGCCGGGAUAUUUGAUAUU ------------------......--(..(((((((........(.(((((((....))))))).).((......(((((.........)))))....))))).))))..).... ( -21.90) >DroSim_CAF1 135132 95 + 1 ------------------GCAUUU--UUGGAUGCCCACUUUUACGAGCCGAUAAUGUUAUUGGCGCAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGGCCGGGAUAUUUGAUAUU ------------------......--(..(((((((........(.(((((((....))))))).).((......(((((.........)))))....))))).))))..).... ( -21.90) >DroEre_CAF1 138428 96 + 1 ------------------GCAUUUU-UUAGCUGCCCACUCUUACGAGCCGAUAAUGUUAUUGGCGUAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGGCCGGGAUAUUUGAUAUU ------------------((.....-...))..(((..((((((..(((((((....)))))))))))))............(.(((........))).))))............ ( -20.70) >DroWil_CAF1 211900 105 + 1 UUUCCCUUAGUUGUUGCCACAUAU--UUUUUUGUC--CUUUUAUGAGCCGAUAAUGUUAUUAGCCUAGGCAUUUUAUGUGUUGACCACUUUUAUCUAUCCU------CCAACCUC ........(((.(((..((((((.--.....((.(--((.....(.((..(((....)))..))).)))))...))))))..))).)))............------........ ( -15.70) >DroYak_CAF1 135835 97 + 1 ------------------GCAUUUUUUUGGGUGCCCACUCUUACGAGCCGAUAAUGUUAUUGGCGUAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGGCCGGGAUAUUCGAUAUU ------------------........((((((((((..((((((..(((((((....)))))))))))))............(.(((........))).)))).))))))).... ( -25.00) >consensus __________________GCAUUU__UUGGAUGCCCACUUUUACGAGCCGAUAAUGUUAUUGGCGCAGGAAUUUUAUGAAUUGACCAUUUUCAUUUGGCCGGGAUAUUUGAUAUU ..........................((((((((((..........(((((((....)))))))...((......(((((.........)))))....))))).))))))).... (-14.37 = -15.48 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:47 2006