Locus 5043

Sequence ID 2L_DroMel_CAF1
Location 14,469,054 – 14,469,170
Length 116
Max. P 0.553301
window8015

overview

Window 5

Location 14,469,054 – 14,469,170
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 76.72
Mean single sequence MFE -26.34
Consensus MFE -19.08
Energy contribution -19.77
Covariance contribution 0.69
Combinations/Pair 1.26
Mean z-score -1.27
Structure conservation index 0.72
SVM decision value 0.04
SVM RNA-class probability 0.553301
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 14469054 116 + 22407834
ACCAGAUUUCUUCGUAGGUUGUAAUCGAGUGAGACUACAAUUGAUUACUUGACGCCUCCGAGAAAUAAUACAAAAAAUGCGGCUUAAGUUGAUUUCGGCUCCAAUUGUAUUGUAUU
.....((((((.((.((((.((((((((.((......)).)))))))).....)))).))))))))((((((....((((((....(((((....)))))....)))))))))))) ( -27.00)
>DroSec_CAF1 55762 116 + 1
ACCAGAUUUCUUCGUAGGUUGUAAUCAACUGAGACUACAGUUGAUUACUUGCCGCAUCCGAGAAAUAAUACAAAAAAUGCGGCUUAAGUUGAUUCCGGCGACAAUUGUAUUGUAUU
.......(((((.(..(((.(((((((((((......)))))))))))..)))....).)))))(((((((((......((((....)))).....(....)..)))))))))... ( -31.20)
>DroEre_CAF1 59437 113 + 1
ACCAGAUUUCUUUGUAGGCUGUAGUCAACUGAAGGAACAGUUUAAUAUAUAACGUCGUCGGGAAAUUA--CA-AAAAUGCGACUUCAGCUUAUUCCGGUCCUAAUAAUAUUACUUC
(((.((.......((((((((.((((..((((..((...(((........))).)).)))).......--((-....)).)))).)))))))))).)))................. ( -20.81)
>consensus
ACCAGAUUUCUUCGUAGGUUGUAAUCAACUGAGACUACAGUUGAUUACUUGACGCCUCCGAGAAAUAAUACAAAAAAUGCGGCUUAAGUUGAUUCCGGCCCCAAUUGUAUUGUAUU
.....((((((.((.((((.(((((((((((......))))))))))).....)))).)))))))).........(((((((.....((((....)))).....)))))))..... (-19.08 = -19.77 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:21 2006